Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 71943 | 0.73 | 0.303004 |
Target: 5'- uGCCGCGCGCcccACUGG-CgUCGGcGCGg- -3' miRNA: 3'- -CGGCGCGUG---UGACCuGgAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71612 | 0.7 | 0.427684 |
Target: 5'- cGCCGCgGCccggGCGC-GGGCC-CGGGCGg- -3' miRNA: 3'- -CGGCG-CG----UGUGaCCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71225 | 0.69 | 0.481651 |
Target: 5'- cGCgCGCGCACGC-GGcCCUCGgcGGCGc- -3' miRNA: 3'- -CG-GCGCGUGUGaCCuGGAGC--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 70408 | 0.68 | 0.519399 |
Target: 5'- cGCCGCGCACAaaGGucACCagcaGGGgGUUg -3' miRNA: 3'- -CGGCGCGUGUgaCC--UGGag--CCCgCAA- -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 70234 | 0.77 | 0.158912 |
Target: 5'- cGCCGCGCGCaaACUcGACCUCGGcGCGc- -3' miRNA: 3'- -CGGCGCGUG--UGAcCUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 69364 | 0.74 | 0.234746 |
Target: 5'- gGCCGCGCgcGCGCUGGACCUCGa----- -3' miRNA: 3'- -CGGCGCG--UGUGACCUGGAGCccgcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 69225 | 0.67 | 0.597896 |
Target: 5'- aGCUGUGCGCGCUGGGgCgguucgcCGaGGCGc- -3' miRNA: 3'- -CGGCGCGUGUGACCUgGa------GC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 68997 | 0.66 | 0.657928 |
Target: 5'- gGCCGCGCggGCGCcGcGGCUUCGuuGGCGa- -3' miRNA: 3'- -CGGCGCG--UGUGaC-CUGGAGC--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 68297 | 0.69 | 0.46328 |
Target: 5'- gGCCGCGgGCGC-GGACCUCuGcGGCc-- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGAG-C-CCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 67052 | 0.71 | 0.353882 |
Target: 5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3' miRNA: 3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 66780 | 0.69 | 0.500368 |
Target: 5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3' miRNA: 3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 66747 | 0.67 | 0.597896 |
Target: 5'- aGuuGUGCACggGCUGGuCCacCGGGUGUg -3' miRNA: 3'- -CggCGCGUG--UGACCuGGa-GCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 63958 | 0.66 | 0.667908 |
Target: 5'- cCCGUGCGCAgCUGGugCgucagcgccagCGGGCu-- -3' miRNA: 3'- cGGCGCGUGU-GACCugGa----------GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 59638 | 0.66 | 0.687778 |
Target: 5'- cUCGCGguCGCUGu-CCUCGaGGCGg- -3' miRNA: 3'- cGGCGCguGUGACcuGGAGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 58275 | 0.7 | 0.410503 |
Target: 5'- cGCCGCGCuCACgGGGCCggcgcgcCGGGgGg- -3' miRNA: 3'- -CGGCGCGuGUGaCCUGGa------GCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 55497 | 0.66 | 0.677861 |
Target: 5'- cGCgGCGCGCuCUGGagcaGCCacUGGGCGa- -3' miRNA: 3'- -CGgCGCGUGuGACC----UGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 54270 | 1.06 | 0.001322 |
Target: 5'- cGCCGCGCACACUGGACCUCGGGCGUUu -3' miRNA: 3'- -CGGCGCGUGUGACCUGGAGCCCGCAA- -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 54049 | 0.67 | 0.617885 |
Target: 5'- aCCGCGCGCGgUGcGCUUCGGuaGUg -3' miRNA: 3'- cGGCGCGUGUgACcUGGAGCCcgCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 53952 | 0.66 | 0.667908 |
Target: 5'- cGCCGCGCuCGCgGG--UUCGGGUGg- -3' miRNA: 3'- -CGGCGCGuGUGaCCugGAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 53709 | 0.67 | 0.617885 |
Target: 5'- cGCCGCGCGCcgcggccaGCUGcGGCgCgcccgcaCGGGCGa- -3' miRNA: 3'- -CGGCGCGUG--------UGAC-CUG-Ga------GCCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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