miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 48667 0.66 0.687778
Target:  5'- aGCCGCGCGgcaacggcgacUAC-GGGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCGCGU-----------GUGaCCUGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 3813 0.73 0.270233
Target:  5'- aGCCGCucGCGCGCUgccgcGGGCC-CGGGCGc- -3'
miRNA:   3'- -CGGCG--CGUGUGA-----CCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 32064 0.73 0.270233
Target:  5'- gGCCGCGCagagcgcgGCGCUGGGgCUCGGGg--- -3'
miRNA:   3'- -CGGCGCG--------UGUGACCUgGAGCCCgcaa -5'
23646 3' -60.9 NC_005261.1 + 104178 0.73 0.276551
Target:  5'- cGCCGCGCGCg--GGuCgUCGGGCGg- -3'
miRNA:   3'- -CGGCGCGUGugaCCuGgAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 92966 0.73 0.282987
Target:  5'- gGCUGCGCACGCgguuGGCUUCGGGgGg- -3'
miRNA:   3'- -CGGCGCGUGUGac--CUGGAGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 52665 0.73 0.282987
Target:  5'- cCCGCGCGCACUucgagcGGGCCcugcucgCGGGCGc- -3'
miRNA:   3'- cGGCGCGUGUGA------CCUGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 71943 0.73 0.303004
Target:  5'- uGCCGCGCGCcccACUGG-CgUCGGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG---UGACCuGgAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 2512 0.72 0.316945
Target:  5'- aGCCGCGC-CGC--GACCUCGgGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGacCUGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 104838 0.72 0.316945
Target:  5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3'
miRNA:   3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 77038 0.74 0.264031
Target:  5'- gGCCGCGCGCGC-GGcCCUC-GGCGa- -3'
miRNA:   3'- -CGGCGCGUGUGaCCuGGAGcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 69364 0.74 0.234746
Target:  5'- gGCCGCGCgcGCGCUGGACCUCGa----- -3'
miRNA:   3'- -CGGCGCG--UGUGACCUGGAGCccgcaa -5'
23646 3' -60.9 NC_005261.1 + 45939 0.74 0.234746
Target:  5'- cGCCGCGCGCGa-GGGCCgccaGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUgaCCUGGag--CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 125295 0.79 0.120382
Target:  5'- gGCCGCGgGCGCcGGACCcgCGGGCGc- -3'
miRNA:   3'- -CGGCGCgUGUGaCCUGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 2550 0.78 0.129933
Target:  5'- cGCCGCG-GCGCUGGGCg-CGGGCGUg -3'
miRNA:   3'- -CGGCGCgUGUGACCUGgaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 51413 0.77 0.154993
Target:  5'- cCCGCGCGCccaccgccuGCUGGGCCcCGGGCGc- -3'
miRNA:   3'- cGGCGCGUG---------UGACCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 70234 0.77 0.158912
Target:  5'- cGCCGCGCGCaaACUcGACCUCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGUG--UGAcCUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 31824 0.76 0.178552
Target:  5'- aGCgGCGCGCGCUGGcgcgcgccgugcugGCCUCGcGGCGc- -3'
miRNA:   3'- -CGgCGCGUGUGACC--------------UGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 98052 0.75 0.213323
Target:  5'- gGCCGCGgGCgGCgGGACCgCGGGCGg- -3'
miRNA:   3'- -CGGCGCgUG-UGaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 31304 0.75 0.218516
Target:  5'- cGCCGC-CGCGCgGGGCCcgCGGGCGc- -3'
miRNA:   3'- -CGGCGcGUGUGaCCUGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 33780 0.75 0.223817
Target:  5'- cGCgGCGaGCGCUGGGCCccgcgCGGGCGg- -3'
miRNA:   3'- -CGgCGCgUGUGACCUGGa----GCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.