Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 31824 | 0.76 | 0.178552 |
Target: 5'- aGCgGCGCGCGCUGGcgcgcgccgugcugGCCUCGcGGCGc- -3' miRNA: 3'- -CGgCGCGUGUGACC--------------UGGAGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 70234 | 0.77 | 0.158912 |
Target: 5'- cGCCGCGCGCaaACUcGACCUCGGcGCGc- -3' miRNA: 3'- -CGGCGCGUG--UGAcCUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 51413 | 0.77 | 0.154993 |
Target: 5'- cCCGCGCGCccaccgccuGCUGGGCCcCGGGCGc- -3' miRNA: 3'- cGGCGCGUG---------UGACCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2550 | 0.78 | 0.129933 |
Target: 5'- cGCCGCG-GCGCUGGGCg-CGGGCGUg -3' miRNA: 3'- -CGGCGCgUGUGACCUGgaGCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 125295 | 0.79 | 0.120382 |
Target: 5'- gGCCGCGgGCGCcGGACCcgCGGGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 104178 | 0.73 | 0.276551 |
Target: 5'- cGCCGCGCGCg--GGuCgUCGGGCGg- -3' miRNA: 3'- -CGGCGCGUGugaCCuGgAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 92966 | 0.73 | 0.282987 |
Target: 5'- gGCUGCGCACGCgguuGGCUUCGGGgGg- -3' miRNA: 3'- -CGGCGCGUGUGac--CUGGAGCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 38346 | 0.71 | 0.361625 |
Target: 5'- gGgCGCGCACGCccagcGGGCCUUugGGGCGg- -3' miRNA: 3'- -CgGCGCGUGUGa----CCUGGAG--CCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 67052 | 0.71 | 0.353882 |
Target: 5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3' miRNA: 3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 51970 | 0.71 | 0.353882 |
Target: 5'- cGCCGCGC-UGCUGGACCgCGGcGCc-- -3' miRNA: 3'- -CGGCGCGuGUGACCUGGaGCC-CGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 101106 | 0.71 | 0.353114 |
Target: 5'- gGCCGCGCGCGCcuuggcgcccucgUGGuCCUCGcGCGa- -3' miRNA: 3'- -CGGCGCGUGUG-------------ACCuGGAGCcCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 28759 | 0.72 | 0.346257 |
Target: 5'- cGCCGCggccggggGCGC-CUGGGCCgcggcgCGGGCGc- -3' miRNA: 3'- -CGGCG--------CGUGuGACCUGGa-----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 84681 | 0.72 | 0.33875 |
Target: 5'- gGCCGCGCACACgaaGCCggcgcgCGGGCa-- -3' miRNA: 3'- -CGGCGCGUGUGaccUGGa-----GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 78333 | 0.72 | 0.331362 |
Target: 5'- cGCCGaCGCGCcaACgcGGuACCUCGGGCGc- -3' miRNA: 3'- -CGGC-GCGUG--UGa-CC-UGGAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 118659 | 0.72 | 0.331362 |
Target: 5'- gGCCGCGCGCucgGGGCUgagggcggCGGGCGc- -3' miRNA: 3'- -CGGCGCGUGugaCCUGGa-------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 72779 | 0.72 | 0.331362 |
Target: 5'- gGCCGCGCACGCguccgGGGCCgCGGacaCGUc -3' miRNA: 3'- -CGGCGCGUGUGa----CCUGGaGCCc--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 104838 | 0.72 | 0.316945 |
Target: 5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3' miRNA: 3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2512 | 0.72 | 0.316945 |
Target: 5'- aGCCGCGC-CGC--GACCUCGgGGCGg- -3' miRNA: 3'- -CGGCGCGuGUGacCUGGAGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71943 | 0.73 | 0.303004 |
Target: 5'- uGCCGCGCGCcccACUGG-CgUCGGcGCGg- -3' miRNA: 3'- -CGGCGCGUG---UGACCuGgAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 52665 | 0.73 | 0.282987 |
Target: 5'- cCCGCGCGCACUucgagcGGGCCcugcucgCGGGCGc- -3' miRNA: 3'- cGGCGCGUGUGA------CCUGGa------GCCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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