Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 104838 | 0.72 | 0.316945 |
Target: 5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3' miRNA: 3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 72779 | 0.72 | 0.331362 |
Target: 5'- gGCCGCGCACGCguccgGGGCCgCGGacaCGUc -3' miRNA: 3'- -CGGCGCGUGUGa----CCUGGaGCCc--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 23221 | 0.71 | 0.377461 |
Target: 5'- gGCCGCGCGCAaaagccggugcagcGGGCCggccugcUCGGGCGa- -3' miRNA: 3'- -CGGCGCGUGUga------------CCUGG-------AGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 74831 | 0.71 | 0.388821 |
Target: 5'- cGCCGUGCuCGC-GGACCUggggaggcggcgcgcCGGGCGg- -3' miRNA: 3'- -CGGCGCGuGUGaCCUGGA---------------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 73466 | 0.71 | 0.393757 |
Target: 5'- uCCGCGCGCcccccCUGGGCCgCGGcGCGg- -3' miRNA: 3'- cGGCGCGUGu----GACCUGGaGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 113547 | 0.71 | 0.393757 |
Target: 5'- gGCCguGCGCGCGCUGGACCgCGaGCa-- -3' miRNA: 3'- -CGG--CGCGUGUGACCUGGaGCcCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 27489 | 0.7 | 0.402075 |
Target: 5'- cCCGgGCGCAcCUGGACCgccaggucUGGGCGg- -3' miRNA: 3'- cGGCgCGUGU-GACCUGGa-------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 74688 | 0.7 | 0.402075 |
Target: 5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3' miRNA: 3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 88162 | 0.7 | 0.402075 |
Target: 5'- gGCCGCGCA-GCcGGGCCg-GGGCGa- -3' miRNA: 3'- -CGGCGCGUgUGaCCUGGagCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 12301 | 0.7 | 0.410503 |
Target: 5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 44971 | 0.71 | 0.369485 |
Target: 5'- -aCGCGCGCGa-GGGCC-CGGGCGg- -3' miRNA: 3'- cgGCGCGUGUgaCCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 105137 | 0.71 | 0.361625 |
Target: 5'- cGCCgGCGCGCGCaGGuCCUCGcGGCu-- -3' miRNA: 3'- -CGG-CGCGUGUGaCCuGGAGC-CCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 118659 | 0.72 | 0.331362 |
Target: 5'- gGCCGCGCGCucgGGGCUgagggcggCGGGCGc- -3' miRNA: 3'- -CGGCGCGUGugaCCUGGa-------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 78333 | 0.72 | 0.331362 |
Target: 5'- cGCCGaCGCGCcaACgcGGuACCUCGGGCGc- -3' miRNA: 3'- -CGGC-GCGUG--UGa-CC-UGGAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 84681 | 0.72 | 0.33875 |
Target: 5'- gGCCGCGCACACgaaGCCggcgcgCGGGCa-- -3' miRNA: 3'- -CGGCGCGUGUGaccUGGa-----GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 28759 | 0.72 | 0.346257 |
Target: 5'- cGCCGCggccggggGCGC-CUGGGCCgcggcgCGGGCGc- -3' miRNA: 3'- -CGGCG--------CGUGuGACCUGGa-----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 101106 | 0.71 | 0.353114 |
Target: 5'- gGCCGCGCGCGCcuuggcgcccucgUGGuCCUCGcGCGa- -3' miRNA: 3'- -CGGCGCGUGUG-------------ACCuGGAGCcCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 51970 | 0.71 | 0.353882 |
Target: 5'- cGCCGCGC-UGCUGGACCgCGGcGCc-- -3' miRNA: 3'- -CGGCGCGuGUGACCUGGaGCC-CGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 67052 | 0.71 | 0.353882 |
Target: 5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3' miRNA: 3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 38346 | 0.71 | 0.361625 |
Target: 5'- gGgCGCGCACGCccagcGGGCCUUugGGGCGg- -3' miRNA: 3'- -CgGCGCGUGUGa----CCUGGAG--CCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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