Results 81 - 100 of 165 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 44034 | 0.7 | 0.427684 |
Target: 5'- gGCCGC-CGCGCgGcGGCCgCGGGCGg- -3' miRNA: 3'- -CGGCGcGUGUGaC-CUGGaGCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 75068 | 0.7 | 0.427684 |
Target: 5'- aCCGCGCGCGCcggcggGGGCUcggCGGGCa-- -3' miRNA: 3'- cGGCGCGUGUGa-----CCUGGa--GCCCGcaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 71612 | 0.7 | 0.427684 |
Target: 5'- cGCCGCgGCccggGCGC-GGGCC-CGGGCGg- -3' miRNA: 3'- -CGGCG-CG----UGUGaCCUGGaGCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 15766 | 0.7 | 0.436432 |
Target: 5'- cGCCGCGaUACACaaGGCCgcuggCGGGCGc- -3' miRNA: 3'- -CGGCGC-GUGUGacCUGGa----GCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 133041 | 0.7 | 0.436432 |
Target: 5'- aCCGCGCACGCacGugCUgCGcGGCGUUg -3' miRNA: 3'- cGGCGCGUGUGacCugGA-GC-CCGCAA- -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 107652 | 0.7 | 0.436432 |
Target: 5'- cGCUGCGCGCGCaaacuccGcGGCCccgcCGGGCGUUg -3' miRNA: 3'- -CGGCGCGUGUGa------C-CUGGa---GCCCGCAA- -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 31546 | 0.7 | 0.445283 |
Target: 5'- cGCCGacuCGCACGcCUGGGCCggguccuggaCGGGCGc- -3' miRNA: 3'- -CGGC---GCGUGU-GACCUGGa---------GCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 12301 | 0.7 | 0.410503 |
Target: 5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 88162 | 0.7 | 0.402075 |
Target: 5'- gGCCGCGCA-GCcGGGCCg-GGGCGa- -3' miRNA: 3'- -CGGCGCGUgUGaCCUGGagCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 74688 | 0.7 | 0.402075 |
Target: 5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3' miRNA: 3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 51970 | 0.71 | 0.353882 |
Target: 5'- cGCCGCGC-UGCUGGACCgCGGcGCc-- -3' miRNA: 3'- -CGGCGCGuGUGACCUGGaGCC-CGcaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 67052 | 0.71 | 0.353882 |
Target: 5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3' miRNA: 3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 38346 | 0.71 | 0.361625 |
Target: 5'- gGgCGCGCACGCccagcGGGCCUUugGGGCGg- -3' miRNA: 3'- -CgGCGCGUGUGa----CCUGGAG--CCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 105137 | 0.71 | 0.361625 |
Target: 5'- cGCCgGCGCGCGCaGGuCCUCGcGGCu-- -3' miRNA: 3'- -CGG-CGCGUGUGaCCuGGAGC-CCGcaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 44971 | 0.71 | 0.369485 |
Target: 5'- -aCGCGCGCGa-GGGCC-CGGGCGg- -3' miRNA: 3'- cgGCGCGUGUgaCCUGGaGCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 23221 | 0.71 | 0.377461 |
Target: 5'- gGCCGCGCGCAaaagccggugcagcGGGCCggccugcUCGGGCGa- -3' miRNA: 3'- -CGGCGCGUGUga------------CCUGG-------AGCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 74831 | 0.71 | 0.388821 |
Target: 5'- cGCCGUGCuCGC-GGACCUggggaggcggcgcgcCGGGCGg- -3' miRNA: 3'- -CGGCGCGuGUGaCCUGGA---------------GCCCGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 73466 | 0.71 | 0.393757 |
Target: 5'- uCCGCGCGCcccccCUGGGCCgCGGcGCGg- -3' miRNA: 3'- cGGCGCGUGu----GACCUGGaGCC-CGCaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 113547 | 0.71 | 0.393757 |
Target: 5'- gGCCguGCGCGCGCUGGACCgCGaGCa-- -3' miRNA: 3'- -CGG--CGCGUGUGACCUGGaGCcCGcaa -5' |
|||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 27489 | 0.7 | 0.402075 |
Target: 5'- cCCGgGCGCAcCUGGACCgccaggucUGGGCGg- -3' miRNA: 3'- cGGCgCGUGU-GACCUGGa-------GCCCGCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home