miRNA display CGI


Results 101 - 120 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 1177 0.69 0.490968
Target:  5'- cCCGCGC-CGCggccgGGGCCggggcCGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUGa----CCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 92608 0.69 0.490968
Target:  5'- cGCgGCGCGUGCcgGGGCCcCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUGUGa-CCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 66780 0.69 0.500368
Target:  5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3'
miRNA:   3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5'
23646 3' -60.9 NC_005261.1 + 113583 0.69 0.500368
Target:  5'- gGCCGC-CGCGCUGGgcgaccucgcGCC-CGGGCa-- -3'
miRNA:   3'- -CGGCGcGUGUGACC----------UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 124938 0.69 0.500368
Target:  5'- cGCCGCGCGCGCUGuGCC---GGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGACcUGGagcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 15766 0.7 0.436432
Target:  5'- cGCCGCGaUACACaaGGCCgcuggCGGGCGc- -3'
miRNA:   3'- -CGGCGC-GUGUGacCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 71612 0.7 0.427684
Target:  5'- cGCCGCgGCccggGCGC-GGGCC-CGGGCGg- -3'
miRNA:   3'- -CGGCG-CG----UGUGaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 23221 0.71 0.377461
Target:  5'- gGCCGCGCGCAaaagccggugcagcGGGCCggccugcUCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUGUga------------CCUGG-------AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74831 0.71 0.388821
Target:  5'- cGCCGUGCuCGC-GGACCUggggaggcggcgcgcCGGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGA---------------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 73466 0.71 0.393757
Target:  5'- uCCGCGCGCcccccCUGGGCCgCGGcGCGg- -3'
miRNA:   3'- cGGCGCGUGu----GACCUGGaGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 113547 0.71 0.393757
Target:  5'- gGCCguGCGCGCGCUGGACCgCGaGCa-- -3'
miRNA:   3'- -CGG--CGCGUGUGACCUGGaGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 27489 0.7 0.402075
Target:  5'- cCCGgGCGCAcCUGGACCgccaggucUGGGCGg- -3'
miRNA:   3'- cGGCgCGUGU-GACCUGGa-------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74688 0.7 0.402075
Target:  5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3'
miRNA:   3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 88162 0.7 0.402075
Target:  5'- gGCCGCGCA-GCcGGGCCg-GGGCGa- -3'
miRNA:   3'- -CGGCGCGUgUGaCCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 12301 0.7 0.410503
Target:  5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3'
miRNA:   3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 58275 0.7 0.410503
Target:  5'- cGCCGCGCuCACgGGGCCggcgcgcCGGGgGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGa------GCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 102495 0.7 0.41904
Target:  5'- cGCCGCGCcaGCGcCUGGGCCUUGcGCa-- -3'
miRNA:   3'- -CGGCGCG--UGU-GACCUGGAGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 21201 0.7 0.427684
Target:  5'- gGCCGCGgACGCUGGccccgGCCgcgacggCGGGCc-- -3'
miRNA:   3'- -CGGCGCgUGUGACC-----UGGa------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 44034 0.7 0.427684
Target:  5'- gGCCGC-CGCGCgGcGGCCgCGGGCGg- -3'
miRNA:   3'- -CGGCGcGUGUGaC-CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 75068 0.7 0.427684
Target:  5'- aCCGCGCGCGCcggcggGGGCUcggCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGa-----CCUGGa--GCCCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.