Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 72779 | 0.72 | 0.331362 |
Target: 5'- gGCCGCGCACGCguccgGGGCCgCGGacaCGUc -3' miRNA: 3'- -CGGCGCGUGUGa----CCUGGaGCCc--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 104838 | 0.72 | 0.316945 |
Target: 5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3' miRNA: 3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 33780 | 0.75 | 0.223817 |
Target: 5'- cGCgGCGaGCGCUGGGCCccgcgCGGGCGg- -3' miRNA: 3'- -CGgCGCgUGUGACCUGGa----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 31304 | 0.75 | 0.218516 |
Target: 5'- cGCCGC-CGCGCgGGGCCcgCGGGCGc- -3' miRNA: 3'- -CGGCGcGUGUGaCCUGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 98052 | 0.75 | 0.213323 |
Target: 5'- gGCCGCGgGCgGCgGGACCgCGGGCGg- -3' miRNA: 3'- -CGGCGCgUG-UGaCCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 31824 | 0.76 | 0.178552 |
Target: 5'- aGCgGCGCGCGCUGGcgcgcgccgugcugGCCUCGcGGCGc- -3' miRNA: 3'- -CGgCGCGUGUGACC--------------UGGAGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 70234 | 0.77 | 0.158912 |
Target: 5'- cGCCGCGCGCaaACUcGACCUCGGcGCGc- -3' miRNA: 3'- -CGGCGCGUG--UGAcCUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 51413 | 0.77 | 0.154993 |
Target: 5'- cCCGCGCGCccaccgccuGCUGGGCCcCGGGCGc- -3' miRNA: 3'- cGGCGCGUG---------UGACCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2550 | 0.78 | 0.129933 |
Target: 5'- cGCCGCG-GCGCUGGGCg-CGGGCGUg -3' miRNA: 3'- -CGGCGCgUGUGACCUGgaGCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 125295 | 0.79 | 0.120382 |
Target: 5'- gGCCGCGgGCGCcGGACCcgCGGGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 45939 | 0.74 | 0.234746 |
Target: 5'- cGCCGCGCGCGa-GGGCCgccaGGGCGc- -3' miRNA: 3'- -CGGCGCGUGUgaCCUGGag--CCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 69364 | 0.74 | 0.234746 |
Target: 5'- gGCCGCGCgcGCGCUGGACCUCGa----- -3' miRNA: 3'- -CGGCGCG--UGUGACCUGGAGCccgcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2512 | 0.72 | 0.316945 |
Target: 5'- aGCCGCGC-CGC--GACCUCGgGGCGg- -3' miRNA: 3'- -CGGCGCGuGUGacCUGGAGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71943 | 0.73 | 0.303004 |
Target: 5'- uGCCGCGCGCcccACUGG-CgUCGGcGCGg- -3' miRNA: 3'- -CGGCGCGUG---UGACCuGgAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 52665 | 0.73 | 0.282987 |
Target: 5'- cCCGCGCGCACUucgagcGGGCCcugcucgCGGGCGc- -3' miRNA: 3'- cGGCGCGUGUGA------CCUGGa------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 92966 | 0.73 | 0.282987 |
Target: 5'- gGCUGCGCACGCgguuGGCUUCGGGgGg- -3' miRNA: 3'- -CGGCGCGUGUGac--CUGGAGCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 104178 | 0.73 | 0.276551 |
Target: 5'- cGCCGCGCGCg--GGuCgUCGGGCGg- -3' miRNA: 3'- -CGGCGCGUGugaCCuGgAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 32064 | 0.73 | 0.270233 |
Target: 5'- gGCCGCGCagagcgcgGCGCUGGGgCUCGGGg--- -3' miRNA: 3'- -CGGCGCG--------UGUGACCUgGAGCCCgcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 3813 | 0.73 | 0.270233 |
Target: 5'- aGCCGCucGCGCGCUgccgcGGGCC-CGGGCGc- -3' miRNA: 3'- -CGGCG--CGUGUGA-----CCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 77038 | 0.74 | 0.264031 |
Target: 5'- gGCCGCGCGCGC-GGcCCUC-GGCGa- -3' miRNA: 3'- -CGGCGCGUGUGaCCuGGAGcCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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