miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 5' -54 NC_005261.1 + 3883 0.66 0.938764
Target:  5'- -cGGCGCgCAGCU-CGGCGAGcGCGgcgcGGg -3'
miRNA:   3'- aaUUGUG-GUCGAgGUCGUUC-CGCa---CC- -5'
23646 5' -54 NC_005261.1 + 91396 0.66 0.938764
Target:  5'- -cGugAUCGucgcGC-CCGGCGAGGaCGUGGa -3'
miRNA:   3'- aaUugUGGU----CGaGGUCGUUCC-GCACC- -5'
23646 5' -54 NC_005261.1 + 32206 0.66 0.938764
Target:  5'- cUGGCGCCcgacgAGCUgCCGGCcgcGGCgGUGGc -3'
miRNA:   3'- aAUUGUGG-----UCGA-GGUCGuu-CCG-CACC- -5'
23646 5' -54 NC_005261.1 + 95787 0.66 0.938764
Target:  5'- --uGCGCCGGCgcgcugcuagCCGGCGccGGCGgGGg -3'
miRNA:   3'- aauUGUGGUCGa---------GGUCGUu-CCGCaCC- -5'
23646 5' -54 NC_005261.1 + 58107 0.66 0.938764
Target:  5'- -cGGCACCAGCcgcgCgAGCAGccugccGaGCGUGGc -3'
miRNA:   3'- aaUUGUGGUCGa---GgUCGUU------C-CGCACC- -5'
23646 5' -54 NC_005261.1 + 43682 0.66 0.938764
Target:  5'- --uGCAgCGGCUCCacGGCGAGGuCcUGGc -3'
miRNA:   3'- aauUGUgGUCGAGG--UCGUUCC-GcACC- -5'
23646 5' -54 NC_005261.1 + 102369 0.66 0.933707
Target:  5'- --cGCGCCucaacgcGCUCCAGCGcGGCGc-- -3'
miRNA:   3'- aauUGUGGu------CGAGGUCGUuCCGCacc -5'
23646 5' -54 NC_005261.1 + 54510 0.66 0.933707
Target:  5'- -aGGCGCC--CUCCGGCGAcGGCGUc- -3'
miRNA:   3'- aaUUGUGGucGAGGUCGUU-CCGCAcc -5'
23646 5' -54 NC_005261.1 + 3434 0.66 0.933707
Target:  5'- ----gGCCAGCgUCCAgGCGGGcGCGcGGg -3'
miRNA:   3'- aauugUGGUCG-AGGU-CGUUC-CGCaCC- -5'
23646 5' -54 NC_005261.1 + 45644 0.66 0.933707
Target:  5'- --cGCGCCGGagcagugcCCAGCG-GGCGUGa -3'
miRNA:   3'- aauUGUGGUCga------GGUCGUuCCGCACc -5'
23646 5' -54 NC_005261.1 + 29799 0.66 0.933707
Target:  5'- -gGAgGCCGGCgCCGGC--GGCGcGGg -3'
miRNA:   3'- aaUUgUGGUCGaGGUCGuuCCGCaCC- -5'
23646 5' -54 NC_005261.1 + 45612 0.66 0.933707
Target:  5'- --cACACCGGCggCgCGGCGcGGCGcGGc -3'
miRNA:   3'- aauUGUGGUCGa-G-GUCGUuCCGCaCC- -5'
23646 5' -54 NC_005261.1 + 19634 0.66 0.931613
Target:  5'- --cACACCAGCUCCcuguggaagAGCAcggccuucagcuugAccacguuGGCGUGGu -3'
miRNA:   3'- aauUGUGGUCGAGG---------UCGU--------------U-------CCGCACC- -5'
23646 5' -54 NC_005261.1 + 70925 0.66 0.928394
Target:  5'- --cGCGCgAGCUCCAGCGccuGcGCGUccgccGGg -3'
miRNA:   3'- aauUGUGgUCGAGGUCGUu--C-CGCA-----CC- -5'
23646 5' -54 NC_005261.1 + 41175 0.66 0.928394
Target:  5'- -cGGC-CCGGgUCCAgGCcGGGCGUGc -3'
miRNA:   3'- aaUUGuGGUCgAGGU-CGuUCCGCACc -5'
23646 5' -54 NC_005261.1 + 108903 0.66 0.928394
Target:  5'- ---cCGCCGGCg--AGCGGGGCGcGGg -3'
miRNA:   3'- aauuGUGGUCGaggUCGUUCCGCaCC- -5'
23646 5' -54 NC_005261.1 + 118686 0.66 0.928394
Target:  5'- -gGGCGCUGGCg-CAcGCGcGGCGUGGu -3'
miRNA:   3'- aaUUGUGGUCGagGU-CGUuCCGCACC- -5'
23646 5' -54 NC_005261.1 + 5102 0.66 0.922825
Target:  5'- --uGCGCCacAGCUCCgccAGCucGGCGcGGg -3'
miRNA:   3'- aauUGUGG--UCGAGG---UCGuuCCGCaCC- -5'
23646 5' -54 NC_005261.1 + 88835 0.66 0.922825
Target:  5'- --cGCGCCGGC-CCGGCGucGGCuaccUGGg -3'
miRNA:   3'- aauUGUGGUCGaGGUCGUu-CCGc---ACC- -5'
23646 5' -54 NC_005261.1 + 126293 0.66 0.922825
Target:  5'- -cGACGCCguGGUUaaaCAGCAcGGgGUGGa -3'
miRNA:   3'- aaUUGUGG--UCGAg--GUCGUuCCgCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.