miRNA display CGI


Results 1 - 20 of 284 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23648 5' -58.3 NC_005261.1 + 74262 0.66 0.825855
Target:  5'- cCCAuUCGCgCGCGcgcGUCCGCGGcGgGCgGg -3'
miRNA:   3'- aGGU-AGCG-GUGU---UAGGCGCC-CgUGgC- -5'
23648 5' -58.3 NC_005261.1 + 120222 0.66 0.825855
Target:  5'- uUCCAgagCGCCGa----CGUGGaGCGCCGc -3'
miRNA:   3'- -AGGUa--GCGGUguuagGCGCC-CGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 14800 0.66 0.825855
Target:  5'- cUCCcgCagGCUGCGcacGUCCGCGGcuuauagauGCGCCGg -3'
miRNA:   3'- -AGGuaG--CGGUGU---UAGGCGCC---------CGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 16251 0.66 0.825855
Target:  5'- gUCCG-CGCCGgGG-CCGCcGGgGCCGg -3'
miRNA:   3'- -AGGUaGCGGUgUUaGGCGcCCgUGGC- -5'
23648 5' -58.3 NC_005261.1 + 120353 0.66 0.825855
Target:  5'- cUCCcugCGCUggACGGUgCGCGacGGCGCCGc -3'
miRNA:   3'- -AGGua-GCGG--UGUUAgGCGC--CCGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 107648 0.66 0.825855
Target:  5'- cCCGcgcugCGCgCGCAAacUCCGCGGcccCGCCGg -3'
miRNA:   3'- aGGUa----GCG-GUGUU--AGGCGCCc--GUGGC- -5'
23648 5' -58.3 NC_005261.1 + 68044 0.66 0.825855
Target:  5'- -aCGUCGCgUACuuuGUCuaCGCGGGCACgGu -3'
miRNA:   3'- agGUAGCG-GUGu--UAG--GCGCCCGUGgC- -5'
23648 5' -58.3 NC_005261.1 + 101858 0.66 0.825855
Target:  5'- gCCGgcCGCCuGCAgcacGUCCGCgcgcaGGGCGCCc -3'
miRNA:   3'- aGGUa-GCGG-UGU----UAGGCG-----CCCGUGGc -5'
23648 5' -58.3 NC_005261.1 + 104 0.66 0.825855
Target:  5'- cCCGggcccCGCCGC---CCGCGccGGCGCCGc -3'
miRNA:   3'- aGGUa----GCGGUGuuaGGCGC--CCGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 137787 0.66 0.825855
Target:  5'- cCCGggcccCGCCGC---CCGCGccGGCGCCGc -3'
miRNA:   3'- aGGUa----GCGGUGuuaGGCGC--CCGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 49806 0.66 0.825855
Target:  5'- -aCGUCGCC-C--UCCGCGgGGCGCg- -3'
miRNA:   3'- agGUAGCGGuGuuAGGCGC-CCGUGgc -5'
23648 5' -58.3 NC_005261.1 + 97100 0.66 0.825855
Target:  5'- gCCGggggCGCCAgcCGggCCGCGGccggagGCGCCGc -3'
miRNA:   3'- aGGUa---GCGGU--GUuaGGCGCC------CGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 35771 0.66 0.825855
Target:  5'- cUCGg-GCCgagACAGgaggcCCGCGGGCGCCa -3'
miRNA:   3'- aGGUagCGG---UGUUa----GGCGCCCGUGGc -5'
23648 5' -58.3 NC_005261.1 + 86435 0.66 0.825855
Target:  5'- gCCAUCGCCAgGugGUCCaGCGcGaacuccuggcccGCGCCGu -3'
miRNA:   3'- aGGUAGCGGUgU--UAGG-CGC-C------------CGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 47374 0.66 0.825855
Target:  5'- aCCAgcgCGCgCACAaccGUCgGgGcGGCGCCGc -3'
miRNA:   3'- aGGUa--GCG-GUGU---UAGgCgC-CCGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 39426 0.66 0.825855
Target:  5'- cCCGUCcCCcgGCGcGUCCGCaGGGCcCCGa -3'
miRNA:   3'- aGGUAGcGG--UGU-UAGGCG-CCCGuGGC- -5'
23648 5' -58.3 NC_005261.1 + 52440 0.66 0.825855
Target:  5'- gUCCAggGCCACGagGUCCcCGGcGCGCg- -3'
miRNA:   3'- -AGGUagCGGUGU--UAGGcGCC-CGUGgc -5'
23648 5' -58.3 NC_005261.1 + 44038 0.66 0.825855
Target:  5'- gCCG-CGCgGCGG-CCGCGGGCGg-- -3'
miRNA:   3'- aGGUaGCGgUGUUaGGCGCCCGUggc -5'
23648 5' -58.3 NC_005261.1 + 107346 0.66 0.825018
Target:  5'- cUCCG-CGUUGCGgaccugcGUCguCGUGGGCGCCGg -3'
miRNA:   3'- -AGGUaGCGGUGU-------UAG--GCGCCCGUGGC- -5'
23648 5' -58.3 NC_005261.1 + 14993 0.66 0.82334
Target:  5'- gCCGgccgCGCCcggaGCGcgggaggaggaguuGUCgGCGGGUGCCGg -3'
miRNA:   3'- aGGUa---GCGG----UGU--------------UAGgCGCCCGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.