miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23649 3' -57.1 NC_005261.1 + 109118 0.66 0.880888
Target:  5'- aUGAGGgCGGCGGUGucGugCG-CGg -3'
miRNA:   3'- gACUCCgGCUGCCACuaCugGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 82635 0.66 0.880888
Target:  5'- -cGAGGCCGACauGUGGUGGUCGUa-- -3'
miRNA:   3'- gaCUCCGGCUGc-CACUACUGGCAgca -5'
23649 3' -57.1 NC_005261.1 + 12760 0.66 0.880888
Target:  5'- -cGAGGUcguaggCGGCGGUGGcggggGGCuCGUCGg -3'
miRNA:   3'- gaCUCCG------GCUGCCACUa----CUG-GCAGCa -5'
23649 3' -57.1 NC_005261.1 + 16201 0.66 0.873798
Target:  5'- -gGGGGCCG-C-GUGAUGGCC-UCGa -3'
miRNA:   3'- gaCUCCGGCuGcCACUACUGGcAGCa -5'
23649 3' -57.1 NC_005261.1 + 26231 0.66 0.866495
Target:  5'- -gGGGGCa-GCGGUGAUaaGACCG-CGg -3'
miRNA:   3'- gaCUCCGgcUGCCACUA--CUGGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 48805 0.66 0.858986
Target:  5'- gUGAGGCCGugcGCGGcGuccgcgacGCCGUCGUc -3'
miRNA:   3'- gACUCCGGC---UGCCaCuac-----UGGCAGCA- -5'
23649 3' -57.1 NC_005261.1 + 104919 0.66 0.858986
Target:  5'- --aGGGCCG-CGGUGAUGuuuGCCG-CGc -3'
miRNA:   3'- gacUCCGGCuGCCACUAC---UGGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 61567 0.66 0.851276
Target:  5'- uCUGAuGGUggCGcUGGUGAUGGCCGuguUCGUg -3'
miRNA:   3'- -GACU-CCG--GCuGCCACUACUGGC---AGCA- -5'
23649 3' -57.1 NC_005261.1 + 28657 0.67 0.835278
Target:  5'- -cGAGGCCGGCGG----GGCCGaCGa -3'
miRNA:   3'- gaCUCCGGCUGCCacuaCUGGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 5504 0.67 0.818555
Target:  5'- gCUGGGGCCGcggcagcgGCGGcGA-GGCCGcCGg -3'
miRNA:   3'- -GACUCCGGC--------UGCCaCUaCUGGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 17649 0.67 0.801168
Target:  5'- -cGAGGCCGAUGaG-GAUGGCgCGccgCGUg -3'
miRNA:   3'- gaCUCCGGCUGC-CaCUACUG-GCa--GCA- -5'
23649 3' -57.1 NC_005261.1 + 23591 0.69 0.726312
Target:  5'- aUGGcGGCgG-UGGUGGUGGCUGUCGc -3'
miRNA:   3'- gACU-CCGgCuGCCACUACUGGCAGCa -5'
23649 3' -57.1 NC_005261.1 + 31462 0.7 0.656471
Target:  5'- -cGAGcGCCGGCGGccUGAgUGGCCGcCGg -3'
miRNA:   3'- gaCUC-CGGCUGCC--ACU-ACUGGCaGCa -5'
23649 3' -57.1 NC_005261.1 + 44882 0.7 0.626082
Target:  5'- -cGAGcGCCG-CGGgGAUGGCCGgggCGUa -3'
miRNA:   3'- gaCUC-CGGCuGCCaCUACUGGCa--GCA- -5'
23649 3' -57.1 NC_005261.1 + 28831 0.71 0.585659
Target:  5'- -cGAGGCgGccGCGGcUGAggcGGCCGUCGUg -3'
miRNA:   3'- gaCUCCGgC--UGCC-ACUa--CUGGCAGCA- -5'
23649 3' -57.1 NC_005261.1 + 126693 0.72 0.555662
Target:  5'- -cGAGGCCGGCGGUGcgGGaaG-CGg -3'
miRNA:   3'- gaCUCCGGCUGCCACuaCUggCaGCa -5'
23649 3' -57.1 NC_005261.1 + 85149 0.72 0.545758
Target:  5'- gUGAGGuuGACGuaguUGAUGGCCG-CGUa -3'
miRNA:   3'- gACUCCggCUGCc---ACUACUGGCaGCA- -5'
23649 3' -57.1 NC_005261.1 + 74807 0.73 0.497204
Target:  5'- -cGAGGCCcgcguGGCGGaGGUGGCCGcCGUg -3'
miRNA:   3'- gaCUCCGG-----CUGCCaCUACUGGCaGCA- -5'
23649 3' -57.1 NC_005261.1 + 70881 0.73 0.469017
Target:  5'- -cGuGGCCGGCGGUGcacAUGGCCGUg-- -3'
miRNA:   3'- gaCuCCGGCUGCCAC---UACUGGCAgca -5'
23649 3' -57.1 NC_005261.1 + 49745 1.08 0.002855
Target:  5'- gCUGAGGCCGACGGUGAUGACCGUCGUg -3'
miRNA:   3'- -GACUCCGGCUGCCACUACUGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.