miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23649 5' -60.8 NC_005261.1 + 90067 0.66 0.723127
Target:  5'- gGCGCcccGCGGGCGcCGagGgCAGCGaCGGGg -3'
miRNA:   3'- -CGUG---CGCCUGCaGCg-CgGUCGC-GCUC- -5'
23649 5' -60.8 NC_005261.1 + 47921 0.77 0.186779
Target:  5'- cCGCGCGGcCGUcacgucccgCGCGCCGcGCGCGAGc -3'
miRNA:   3'- cGUGCGCCuGCA---------GCGCGGU-CGCGCUC- -5'
23649 5' -60.8 NC_005261.1 + 38536 0.77 0.191343
Target:  5'- cGCGCGcCGGGCacaGCGCCGGCGCGcGg -3'
miRNA:   3'- -CGUGC-GCCUGcagCGCGGUCGCGCuC- -5'
23649 5' -60.8 NC_005261.1 + 59486 0.77 0.191343
Target:  5'- -gGCGCGGcCGcCGCGCCAGCgGCGGc -3'
miRNA:   3'- cgUGCGCCuGCaGCGCGGUCG-CGCUc -5'
23649 5' -60.8 NC_005261.1 + 93351 0.76 0.210589
Target:  5'- aGCGCGCGcaGCG-CGCGCCAGUGCGc- -3'
miRNA:   3'- -CGUGCGCc-UGCaGCGCGGUCGCGCuc -5'
23649 5' -60.8 NC_005261.1 + 13640 0.76 0.214123
Target:  5'- uGCACGCGGaagcgcGCGcCGUGCCgccgccgcggggggGGCGCGGGg -3'
miRNA:   3'- -CGUGCGCC------UGCaGCGCGG--------------UCGCGCUC- -5'
23649 5' -60.8 NC_005261.1 + 15784 0.76 0.215143
Target:  5'- cGCugGCGGGCGcCGCccgcgcgGCCAGCGCc-- -3'
miRNA:   3'- -CGugCGCCUGCaGCG-------CGGUCGCGcuc -5'
23649 5' -60.8 NC_005261.1 + 62217 0.76 0.215654
Target:  5'- uGCGCGCGGccGCGUCuGCGCCcuCGCGGu -3'
miRNA:   3'- -CGUGCGCC--UGCAG-CGCGGucGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 13686 0.76 0.220823
Target:  5'- gGCGCGCGGGCGUgGgGCgGG-GCGGGc -3'
miRNA:   3'- -CGUGCGCCUGCAgCgCGgUCgCGCUC- -5'
23649 5' -60.8 NC_005261.1 + 63021 0.77 0.182311
Target:  5'- cCGCGCGGGCGcCgGCGCCcGCgGCGAGg -3'
miRNA:   3'- cGUGCGCCUGCaG-CGCGGuCG-CGCUC- -5'
23649 5' -60.8 NC_005261.1 + 116495 0.77 0.172813
Target:  5'- gGCGCGCGGuauaaagagcgcCGcCGCGgCGGCGCGAGg -3'
miRNA:   3'- -CGUGCGCCu-----------GCaGCGCgGUCGCGCUC- -5'
23649 5' -60.8 NC_005261.1 + 31317 0.78 0.165373
Target:  5'- gGCcCGCGGGCGcgcUCGcCGCCAGCGCGc- -3'
miRNA:   3'- -CGuGCGCCUGC---AGC-GCGGUCGCGCuc -5'
23649 5' -60.8 NC_005261.1 + 118806 0.86 0.048581
Target:  5'- cGCACGUGGGCGUCuGCGCCcugGGCGCGGc -3'
miRNA:   3'- -CGUGCGCCUGCAG-CGCGG---UCGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 131745 0.85 0.05394
Target:  5'- uGCACGCGGACGgcaCGCcgGCCGGCGCGGc -3'
miRNA:   3'- -CGUGCGCCUGCa--GCG--CGGUCGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 46811 0.84 0.058331
Target:  5'- cGCGCGCGGAUGgcgCGCGCCAGgCGCGc- -3'
miRNA:   3'- -CGUGCGCCUGCa--GCGCGGUC-GCGCuc -5'
23649 5' -60.8 NC_005261.1 + 3450 0.81 0.105484
Target:  5'- gGCGCGCGGGcCGcCGCGCCGcGCGuCGAGu -3'
miRNA:   3'- -CGUGCGCCU-GCaGCGCGGU-CGC-GCUC- -5'
23649 5' -60.8 NC_005261.1 + 31580 0.8 0.108194
Target:  5'- gGCGCGcCGGACGUgagCGCGCuCGGCGCGcAGg -3'
miRNA:   3'- -CGUGC-GCCUGCA---GCGCG-GUCGCGC-UC- -5'
23649 5' -60.8 NC_005261.1 + 104320 0.79 0.139109
Target:  5'- aGCGCGCGGACGcgCGCGuCCAGCGgcCGGc -3'
miRNA:   3'- -CGUGCGCCUGCa-GCGC-GGUCGC--GCUc -5'
23649 5' -60.8 NC_005261.1 + 127872 0.78 0.157445
Target:  5'- gGCACgaGCGGGaGUCGCGCCGGCGCc-- -3'
miRNA:   3'- -CGUG--CGCCUgCAGCGCGGUCGCGcuc -5'
23649 5' -60.8 NC_005261.1 + 123173 0.78 0.161365
Target:  5'- gGCGCGCGGGCGUgGUgGCUGGUGUGGGc -3'
miRNA:   3'- -CGUGCGCCUGCAgCG-CGGUCGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.