miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2365 3' -48.3 NC_001416.1 + 106 1.04 0.006586
Target:  5'- aAAAGAAAGGAAACGACAGGUGCUGAAa -3'
miRNA:   3'- -UUUCUUUCCUUUGCUGUCCACGACUU- -5'
2365 3' -48.3 NC_001416.1 + 11043 0.71 0.740882
Target:  5'- -cAGAGccGGGcAGGCGGCAGG-GCUGAc -3'
miRNA:   3'- uuUCUU--UCC-UUUGCUGUCCaCGACUu -5'
2365 3' -48.3 NC_001416.1 + 8285 0.68 0.873081
Target:  5'- --uGAAAGGugGCGGCAGcGUGCUu-- -3'
miRNA:   3'- uuuCUUUCCuuUGCUGUC-CACGAcuu -5'
2365 3' -48.3 NC_001416.1 + 14578 0.68 0.889577
Target:  5'- -uGGAuaaucuGGAGGCGACGGG-GCUGu- -3'
miRNA:   3'- uuUCUuu----CCUUUGCUGUCCaCGACuu -5'
2365 3' -48.3 NC_001416.1 + 217 0.72 0.682454
Target:  5'- cAGAGAAAGGAAACGACAGaG-GCc--- -3'
miRNA:   3'- -UUUCUUUCCUUUGCUGUC-CaCGacuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.