miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 85384 0.66 0.865637
Target:  5'- cGCccuCGGGC---UUCUGGUAGGCGCc -3'
miRNA:   3'- aCGuu-GCCCGuuaGAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 29972 0.66 0.865637
Target:  5'- gGCGGCGcGGUGcgCcgccggcgcgUCCGGCAgcGGCGCg -3'
miRNA:   3'- aCGUUGC-CCGUuaG----------AGGUCGU--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 10587 0.66 0.865637
Target:  5'- aUGCGACGugagcGGCAGcgaCUCCAGCA-GCGa -3'
miRNA:   3'- -ACGUUGC-----CCGUUa--GAGGUCGUcCGUg -5'
23650 3' -56.1 NC_005261.1 + 105108 0.66 0.865637
Target:  5'- cGCGG-GGGCuugC-CCGcGCGGGCGCg -3'
miRNA:   3'- aCGUUgCCCGuuaGaGGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 103129 0.66 0.865637
Target:  5'- cGCGccCGGGU--UCUCCAGCGccucgcGGUACc -3'
miRNA:   3'- aCGUu-GCCCGuuAGAGGUCGU------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 22704 0.66 0.860202
Target:  5'- gGCGACGaGGCcGUCgaggagccggaggaCCAGCgccagucGGGCGCg -3'
miRNA:   3'- aCGUUGC-CCGuUAGa-------------GGUCG-------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 75539 0.66 0.85784
Target:  5'- cUGCAGCGGcuGCGcGUCcugCCGGCcauccccgGGGCGCu -3'
miRNA:   3'- -ACGUUGCC--CGU-UAGa--GGUCG--------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 20851 0.66 0.85784
Target:  5'- gGCAGCGuGGCGG-CUCUugcgccGCGGGC-Cg -3'
miRNA:   3'- aCGUUGC-CCGUUaGAGGu-----CGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 106420 0.66 0.85784
Target:  5'- cUGCAGCGGGCcgcGGUCcacgcccgcCCAGUcGGcCACg -3'
miRNA:   3'- -ACGUUGCCCG---UUAGa--------GGUCGuCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 31312 0.66 0.85784
Target:  5'- cGCGgggcccGCGGGCGcgCUcgccgCCAGCGcgccgcugcggcGGCGCg -3'
miRNA:   3'- aCGU------UGCCCGUuaGA-----GGUCGU------------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 50641 0.66 0.85784
Target:  5'- gGCGGCGGGguGgcgCCGGCGaacGCGCu -3'
miRNA:   3'- aCGUUGCCCguUagaGGUCGUc--CGUG- -5'
23650 3' -56.1 NC_005261.1 + 88167 0.66 0.857048
Target:  5'- cGCAGCcgggccgGGGCGAcg-CCGGC-GGCGCc -3'
miRNA:   3'- aCGUUG-------CCCGUUagaGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 60135 0.66 0.849828
Target:  5'- cGCGaacACGGGC--UC-CCAggcgcuGCAGGCGCc -3'
miRNA:   3'- aCGU---UGCCCGuuAGaGGU------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 116519 0.66 0.849828
Target:  5'- cGCGGCGGcGCGAggcccgccgCUCCGcGCccGCGCg -3'
miRNA:   3'- aCGUUGCC-CGUUa--------GAGGU-CGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 72750 0.66 0.849828
Target:  5'- cGCAugGCGGGCcgcaugC-CCAGCAcGGCGg -3'
miRNA:   3'- aCGU--UGCCCGuua---GaGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 6433 0.66 0.849828
Target:  5'- cGCGA-GGGCGGUCcgggggCCGGcCGGGCu- -3'
miRNA:   3'- aCGUUgCCCGUUAGa-----GGUC-GUCCGug -5'
23650 3' -56.1 NC_005261.1 + 42674 0.66 0.849828
Target:  5'- gGCGGcCGGGCcgccgCCGGCAGccGCGCg -3'
miRNA:   3'- aCGUU-GCCCGuuagaGGUCGUC--CGUG- -5'
23650 3' -56.1 NC_005261.1 + 125639 0.66 0.841609
Target:  5'- aGCAGCugguugaGGCGGUCccCCAGCAG-CGCg -3'
miRNA:   3'- aCGUUGc------CCGUUAGa-GGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 106956 0.66 0.841609
Target:  5'- gGCc-CGGGCGcgCUCC-GCcucGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUuaGAGGuCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98074 0.66 0.841609
Target:  5'- gGCGGCGGGUguguccuuggagAAUCUgggggCgCGGCGGGCGg -3'
miRNA:   3'- aCGUUGCCCG------------UUAGA-----G-GUCGUCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.