Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23650 | 3' | -56.1 | NC_005261.1 | + | 93920 | 0.66 | 0.841609 |
Target: 5'- gGCGcccGCGGGCuugCgCCGuccGCGGGCGCc -3' miRNA: 3'- aCGU---UGCCCGuuaGaGGU---CGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 64884 | 0.66 | 0.829769 |
Target: 5'- gGCGGCGGGagcgccgggUCCAGCAG-CGCg -3' miRNA: 3'- aCGUUGCCCguuag----AGGUCGUCcGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 58027 | 0.66 | 0.841609 |
Target: 5'- cGCGGC-GGCAG-CUCCAGgGaGCGCg -3' miRNA: 3'- aCGUUGcCCGUUaGAGGUCgUcCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 121773 | 0.66 | 0.83319 |
Target: 5'- cGCggUGGGguGgccgCggCCGGCGGGCu- -3' miRNA: 3'- aCGuuGCCCguUa---Ga-GGUCGUCCGug -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 54772 | 0.66 | 0.841609 |
Target: 5'- gUGCGGCGGGCGA----CAGgAcGGCGCg -3' miRNA: 3'- -ACGUUGCCCGUUagagGUCgU-CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 54827 | 0.66 | 0.841609 |
Target: 5'- cGCGucauacGCGGGCAGgg-CUAGCugccGGCGCc -3' miRNA: 3'- aCGU------UGCCCGUUagaGGUCGu---CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 98471 | 0.66 | 0.83319 |
Target: 5'- -cCGACGGGCGgccGUcCUCC-GCGGGCuCg -3' miRNA: 3'- acGUUGCCCGU---UA-GAGGuCGUCCGuG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 59735 | 0.66 | 0.83319 |
Target: 5'- aGCGGCGGcGCGcggccgccCUCCAcCAGGCAg -3' miRNA: 3'- aCGUUGCC-CGUua------GAGGUcGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 92454 | 0.66 | 0.83319 |
Target: 5'- aGCAccACGGGC-GUCgUCCGGaugagcGGCACc -3' miRNA: 3'- aCGU--UGCCCGuUAG-AGGUCgu----CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 105270 | 0.66 | 0.83319 |
Target: 5'- gGCucGGCGGGCGGcagCgCCGGCgagcccGGGCGCg -3' miRNA: 3'- aCG--UUGCCCGUUa--GaGGUCG------UCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 88199 | 0.66 | 0.841609 |
Target: 5'- gGCGagGCGGGCcg-CgCCGGCAaGCGCg -3' miRNA: 3'- aCGU--UGCCCGuuaGaGGUCGUcCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 101691 | 0.66 | 0.839941 |
Target: 5'- gGCGaaGCGGGCGuggucgaagcgCUCCAGCu-GCGCc -3' miRNA: 3'- aCGU--UGCCCGUua---------GAGGUCGucCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 135757 | 0.66 | 0.83319 |
Target: 5'- aGCcGCGcGGUGcgCUCCGGCgcAGaGCGCg -3' miRNA: 3'- aCGuUGC-CCGUuaGAGGUCG--UC-CGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 52671 | 0.66 | 0.83319 |
Target: 5'- cGCAcuucgaGCGGGCccugCUC--GCGGGCGCg -3' miRNA: 3'- aCGU------UGCCCGuua-GAGguCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 86411 | 0.66 | 0.832338 |
Target: 5'- aGCAgcuGCGGGCAgaacccgcacgccAUCgCCAGguGGUccaGCg -3' miRNA: 3'- aCGU---UGCCCGU-------------UAGaGGUCguCCG---UG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 103129 | 0.66 | 0.865637 |
Target: 5'- cGCGccCGGGU--UCUCCAGCGccucgcGGUACc -3' miRNA: 3'- aCGUu-GCCCGuuAGAGGUCGU------CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 106956 | 0.66 | 0.841609 |
Target: 5'- gGCc-CGGGCGcgCUCC-GCcucGGCGCg -3' miRNA: 3'- aCGuuGCCCGUuaGAGGuCGu--CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 127794 | 0.66 | 0.83319 |
Target: 5'- aGCGGCGGGCcggcgccgCggCGGCGGGcCGCu -3' miRNA: 3'- aCGUUGCCCGuua-----GagGUCGUCC-GUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 98074 | 0.66 | 0.841609 |
Target: 5'- gGCGGCGGGUguguccuuggagAAUCUgggggCgCGGCGGGCGg -3' miRNA: 3'- aCGUUGCCCG------------UUAGA-----G-GUCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 42186 | 0.66 | 0.83319 |
Target: 5'- cGCAG-GGcGCGAgccgCUCCAcggcgccgcGCGGGCGCc -3' miRNA: 3'- aCGUUgCC-CGUUa---GAGGU---------CGUCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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