miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 98471 0.66 0.83319
Target:  5'- -cCGACGGGCGgccGUcCUCC-GCGGGCuCg -3'
miRNA:   3'- acGUUGCCCGU---UA-GAGGuCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 20851 0.66 0.85784
Target:  5'- gGCAGCGuGGCGG-CUCUugcgccGCGGGC-Cg -3'
miRNA:   3'- aCGUUGC-CCGUUaGAGGu-----CGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 106956 0.66 0.841609
Target:  5'- gGCc-CGGGCGcgCUCC-GCcucGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUuaGAGGuCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 72750 0.66 0.849828
Target:  5'- cGCAugGCGGGCcgcaugC-CCAGCAcGGCGg -3'
miRNA:   3'- aCGU--UGCCCGuua---GaGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 10587 0.66 0.865637
Target:  5'- aUGCGACGugagcGGCAGcgaCUCCAGCA-GCGa -3'
miRNA:   3'- -ACGUUGC-----CCGUUa--GAGGUCGUcCGUg -5'
23650 3' -56.1 NC_005261.1 + 54827 0.66 0.841609
Target:  5'- cGCGucauacGCGGGCAGgg-CUAGCugccGGCGCc -3'
miRNA:   3'- aCGU------UGCCCGUUagaGGUCGu---CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 93920 0.66 0.841609
Target:  5'- gGCGcccGCGGGCuugCgCCGuccGCGGGCGCc -3'
miRNA:   3'- aCGU---UGCCCGuuaGaGGU---CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 31312 0.66 0.85784
Target:  5'- cGCGgggcccGCGGGCGcgCUcgccgCCAGCGcgccgcugcggcGGCGCg -3'
miRNA:   3'- aCGU------UGCCCGUuaGA-----GGUCGU------------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 92454 0.66 0.83319
Target:  5'- aGCAccACGGGC-GUCgUCCGGaugagcGGCACc -3'
miRNA:   3'- aCGU--UGCCCGuUAG-AGGUCgu----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 75539 0.66 0.85784
Target:  5'- cUGCAGCGGcuGCGcGUCcugCCGGCcauccccgGGGCGCu -3'
miRNA:   3'- -ACGUUGCC--CGU-UAGa--GGUCG--------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 105270 0.66 0.83319
Target:  5'- gGCucGGCGGGCGGcagCgCCGGCgagcccGGGCGCg -3'
miRNA:   3'- aCG--UUGCCCGUUa--GaGGUCG------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 105108 0.66 0.865637
Target:  5'- cGCGG-GGGCuugC-CCGcGCGGGCGCg -3'
miRNA:   3'- aCGUUgCCCGuuaGaGGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 116519 0.66 0.849828
Target:  5'- cGCGGCGGcGCGAggcccgccgCUCCGcGCccGCGCg -3'
miRNA:   3'- aCGUUGCC-CGUUa--------GAGGU-CGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 107694 0.66 0.841609
Target:  5'- cGCGGCGGGgGcgccgccgaacGUCgcugCCgcGGCAGGCGg -3'
miRNA:   3'- aCGUUGCCCgU-----------UAGa---GG--UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 6433 0.66 0.849828
Target:  5'- cGCGA-GGGCGGUCcgggggCCGGcCGGGCu- -3'
miRNA:   3'- aCGUUgCCCGUUAGa-----GGUC-GUCCGug -5'
23650 3' -56.1 NC_005261.1 + 101691 0.66 0.839941
Target:  5'- gGCGaaGCGGGCGuggucgaagcgCUCCAGCu-GCGCc -3'
miRNA:   3'- aCGU--UGCCCGUua---------GAGGUCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 85384 0.66 0.865637
Target:  5'- cGCccuCGGGC---UUCUGGUAGGCGCc -3'
miRNA:   3'- aCGuu-GCCCGuuaGAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 59735 0.66 0.83319
Target:  5'- aGCGGCGGcGCGcggccgccCUCCAcCAGGCAg -3'
miRNA:   3'- aCGUUGCC-CGUua------GAGGUcGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 88199 0.66 0.841609
Target:  5'- gGCGagGCGGGCcg-CgCCGGCAaGCGCg -3'
miRNA:   3'- aCGU--UGCCCGuuaGaGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 36591 0.67 0.806816
Target:  5'- cGCGGCcaccggggggGGGCAGcgCUCCuGCGccccGGCGCa -3'
miRNA:   3'- aCGUUG----------CCCGUUa-GAGGuCGU----CCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.