Results 41 - 60 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23650 | 3' | -56.1 | NC_005261.1 | + | 57544 | 0.67 | 0.79768 |
Target: 5'- gGCGcACGGGCAcacGUCgcacgcgcCCGGCuccGGCGCc -3' miRNA: 3'- aCGU-UGCCCGU---UAGa-------GGUCGu--CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 55329 | 0.67 | 0.796757 |
Target: 5'- gUGCuGugGGGCGgccGUCUCUcccggaaagcagcGGCAGGCcCa -3' miRNA: 3'- -ACG-UugCCCGU---UAGAGG-------------UCGUCCGuG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 73278 | 0.67 | 0.79768 |
Target: 5'- aGUAGCGGGCGAagggguagCacaGGCAGGCGg -3' miRNA: 3'- aCGUUGCCCGUUaga-----Gg--UCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 63083 | 0.67 | 0.788387 |
Target: 5'- aGCGGCGGGUAcgcCUCCuggaagAGCGcGCACg -3' miRNA: 3'- aCGUUGCCCGUua-GAGG------UCGUcCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 113011 | 0.67 | 0.788387 |
Target: 5'- aUGCugGGCGGGCAGUaccCCacagAGCGGGcCGCg -3' miRNA: 3'- -ACG--UUGCCCGUUAga-GG----UCGUCC-GUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 83130 | 0.67 | 0.788387 |
Target: 5'- cGCGcGCGcGGCAcgC-CCuGCAGGUGCg -3' miRNA: 3'- aCGU-UGC-CCGUuaGaGGuCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 98985 | 0.67 | 0.79768 |
Target: 5'- aGC-ACGucguccucGGCAAUCUUCAGCGucgcgagcggcGGCGCg -3' miRNA: 3'- aCGuUGC--------CCGUUAGAGGUCGU-----------CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 2632 | 0.67 | 0.795834 |
Target: 5'- gGCAugGGGCccagcacgCgGGCGGGCAg -3' miRNA: 3'- aCGUugCCCGuuaga---GgUCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 48455 | 0.67 | 0.796757 |
Target: 5'- cGCGGcCGGcGCGGUCaacgccggccgagUCCAGCAGgGCGa -3' miRNA: 3'- aCGUU-GCC-CGUUAG-------------AGGUCGUC-CGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 52970 | 0.67 | 0.788387 |
Target: 5'- cGCGcCGGuGCGGcg-CCGGCAGGCGg -3' miRNA: 3'- aCGUuGCC-CGUUagaGGUCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 63964 | 0.67 | 0.82458 |
Target: 5'- cGCAGCuGGuGC-GUCagcgCCAGCGGGCuCa -3' miRNA: 3'- aCGUUG-CC-CGuUAGa---GGUCGUCCGuG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 46106 | 0.67 | 0.82458 |
Target: 5'- gGCcGgGGGCcguGGUCcgcgUCCAGCAGGuCGCc -3' miRNA: 3'- aCGuUgCCCG---UUAG----AGGUCGUCC-GUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 71074 | 0.67 | 0.810424 |
Target: 5'- cGCGGCGGGCGGggcgUCCGGgcccgagaaggcguaCAcGGCGCg -3' miRNA: 3'- aCGUUGCCCGUUag--AGGUC---------------GU-CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 137029 | 0.67 | 0.80772 |
Target: 5'- aGCAGaacggcgucgguggaGGGCGGaCcgUCGGCAGGCGCg -3' miRNA: 3'- aCGUUg--------------CCCGUUaGa-GGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 56806 | 0.67 | 0.815785 |
Target: 5'- gGCAGCGGGCcacggugUUCCuggugccgcGGC-GGCACg -3' miRNA: 3'- aCGUUGCCCGuua----GAGG---------UCGuCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 108004 | 0.67 | 0.788387 |
Target: 5'- cGCcguCGGGCAGcC-CCAGCAGcggcaGCACg -3' miRNA: 3'- aCGuu-GCCCGUUaGaGGUCGUC-----CGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 98199 | 0.67 | 0.787449 |
Target: 5'- cGCGGCGGGC-------AGCGGGCGCc -3' miRNA: 3'- aCGUUGCCCGuuagaggUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 4141 | 0.67 | 0.815785 |
Target: 5'- cUGC-ACGcGCcg-CUgCAGCAGGCGCg -3' miRNA: 3'- -ACGuUGCcCGuuaGAgGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 57823 | 0.67 | 0.82458 |
Target: 5'- gGCGAagGGGUccacgugCUCC-GCGGGCGCg -3' miRNA: 3'- aCGUUg-CCCGuua----GAGGuCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 34386 | 0.67 | 0.787449 |
Target: 5'- cGCAgacGCGGcGCAggaguuuAUCgaCCGGguGGCGCg -3' miRNA: 3'- aCGU---UGCC-CGU-------UAGa-GGUCguCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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