miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 98199 0.67 0.787449
Target:  5'- cGCGGCGGGC-------AGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCCGuuagaggUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 63083 0.67 0.788387
Target:  5'- aGCGGCGGGUAcgcCUCCuggaagAGCGcGCACg -3'
miRNA:   3'- aCGUUGCCCGUua-GAGG------UCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108004 0.67 0.788387
Target:  5'- cGCcguCGGGCAGcC-CCAGCAGcggcaGCACg -3'
miRNA:   3'- aCGuu-GCCCGUUaGaGGUCGUC-----CGUG- -5'
23650 3' -56.1 NC_005261.1 + 4500 0.67 0.788387
Target:  5'- cUGC-GCGGGCcccAGUCgcgcgcCCGcGCGGGCGCc -3'
miRNA:   3'- -ACGuUGCCCG---UUAGa-----GGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 113011 0.67 0.788387
Target:  5'- aUGCugGGCGGGCAGUaccCCacagAGCGGGcCGCg -3'
miRNA:   3'- -ACG--UUGCCCGUUAga-GG----UCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 52970 0.67 0.788387
Target:  5'- cGCGcCGGuGCGGcg-CCGGCAGGCGg -3'
miRNA:   3'- aCGUuGCC-CGUUagaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 57544 0.67 0.79768
Target:  5'- gGCGcACGGGCAcacGUCgcacgcgcCCGGCuccGGCGCc -3'
miRNA:   3'- aCGU-UGCCCGU---UAGa-------GGUCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 73278 0.67 0.79768
Target:  5'- aGUAGCGGGCGAagggguagCacaGGCAGGCGg -3'
miRNA:   3'- aCGUUGCCCGUUaga-----Gg--UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 98985 0.67 0.79768
Target:  5'- aGC-ACGucguccucGGCAAUCUUCAGCGucgcgagcggcGGCGCg -3'
miRNA:   3'- aCGuUGC--------CCGUUAGAGGUCGU-----------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 48455 0.67 0.796757
Target:  5'- cGCGGcCGGcGCGGUCaacgccggccgagUCCAGCAGgGCGa -3'
miRNA:   3'- aCGUU-GCC-CGUUAG-------------AGGUCGUC-CGUg -5'
23650 3' -56.1 NC_005261.1 + 55329 0.67 0.796757
Target:  5'- gUGCuGugGGGCGgccGUCUCUcccggaaagcagcGGCAGGCcCa -3'
miRNA:   3'- -ACG-UugCCCGU---UAGAGG-------------UCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 2632 0.67 0.795834
Target:  5'- gGCAugGGGCccagcacgCgGGCGGGCAg -3'
miRNA:   3'- aCGUugCCCGuuaga---GgUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 118680 0.67 0.7986
Target:  5'- gGCGGCGGGCGcuggCgcacgcgcggcguggUCCugcucagcgucgcgGGCGGGCACg -3'
miRNA:   3'- aCGUUGCCCGUua--G---------------AGG--------------UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 29543 0.68 0.749835
Target:  5'- aGCucGCGGGCccgGAcCUgCAGCuGGCGCg -3'
miRNA:   3'- aCGu-UGCCCG---UUaGAgGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 13097 0.68 0.749835
Target:  5'- gGCGGCGGGCucggCUCgggggcgucggCGGCcgcgGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGuua-GAG-----------GUCG----UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 85540 0.68 0.749835
Target:  5'- cGCGcGCGGGCGG-CUCCGucuGC-GGCGCc -3'
miRNA:   3'- aCGU-UGCCCGUUaGAGGU---CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 125295 0.68 0.749835
Target:  5'- gGCcGCGGGCGccggaCCcGCGGGCGCu -3'
miRNA:   3'- aCGuUGCCCGUuaga-GGuCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 64488 0.68 0.739901
Target:  5'- gUGCAGCGGGUGGcgcgggugcUCggggCCcGCGGGCGg -3'
miRNA:   3'- -ACGUUGCCCGUU---------AGa---GGuCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 9641 0.68 0.749835
Target:  5'- gGCugggUGGGCGGggcccaCUCgGGCGGGCGCc -3'
miRNA:   3'- aCGuu--GCCCGUUa-----GAGgUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 123013 0.68 0.729868
Target:  5'- cGCGGcCGuGGCGuccgcgagcGUCggCAGCAGGCACc -3'
miRNA:   3'- aCGUU-GC-CCGU---------UAGagGUCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.