Results 21 - 40 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23650 | 3' | -56.1 | NC_005261.1 | + | 98358 | 0.74 | 0.391369 |
Target: 5'- gGCGGgggUGGGCGcgggCUCUGGCGGGCGCa -3' miRNA: 3'- aCGUU---GCCCGUua--GAGGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 2749 | 0.74 | 0.391369 |
Target: 5'- cGCGGCGGGCcGUCg-CGGCGGGCc- -3' miRNA: 3'- aCGUUGCCCGuUAGagGUCGUCCGug -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 42615 | 0.73 | 0.47364 |
Target: 5'- cGC-GCGGcGCAAagUCCAGCGGGgACu -3' miRNA: 3'- aCGuUGCC-CGUUagAGGUCGUCCgUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 44295 | 0.73 | 0.47364 |
Target: 5'- aGCGGCGGGcCAGggccgCUgCCcGCGGGCGCc -3' miRNA: 3'- aCGUUGCCC-GUUa----GA-GGuCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 110035 | 0.73 | 0.482347 |
Target: 5'- cGCcuGGCGGGCAGccccacauccggcUCUCgCGGCAGGuCACc -3' miRNA: 3'- aCG--UUGCCCGUU-------------AGAG-GUCGUCC-GUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 3426 | 0.73 | 0.483318 |
Target: 5'- aGCGcGCGGGCcagCgUCCAgGCGGGCGCg -3' miRNA: 3'- aCGU-UGCCCGuuaG-AGGU-CGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 76029 | 0.73 | 0.464061 |
Target: 5'- cGCcGCGGGCGccccgcgcgccAUCagcguggCCGGCGGGCGCc -3' miRNA: 3'- aCGuUGCCCGU-----------UAGa------GGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 125339 | 0.73 | 0.464061 |
Target: 5'- cGCAGCGcGCAGggCgUCCAGCAGGCu- -3' miRNA: 3'- aCGUUGCcCGUUa-G-AGGUCGUCCGug -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 14131 | 0.73 | 0.461206 |
Target: 5'- gGCggUGGGCAGUCgcucgcgaggacgcUCCAGCcgcgaacGGCGCg -3' miRNA: 3'- aCGuuGCCCGUUAG--------------AGGUCGu------CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 54477 | 0.73 | 0.454583 |
Target: 5'- gGCAucCGGGC-GUCgggCGGCAGGCGCa -3' miRNA: 3'- aCGUu-GCCCGuUAGag-GUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 66509 | 0.73 | 0.454583 |
Target: 5'- aGCAGCGacauuGGCGGcgccuUCUCCAGCAGcacGCGCa -3' miRNA: 3'- aCGUUGC-----CCGUU-----AGAGGUCGUC---CGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 27469 | 0.73 | 0.445211 |
Target: 5'- cGCGggGCGGGCAGgccCUCCc-CGGGCGCa -3' miRNA: 3'- aCGU--UGCCCGUUa--GAGGucGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 34483 | 0.72 | 0.542178 |
Target: 5'- cUGCGGCGGGUgcuggagugggucGAgggcgCUCUGGUGGGCACc -3' miRNA: 3'- -ACGUUGCCCG-------------UUa----GAGGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 45633 | 0.72 | 0.533028 |
Target: 5'- cGCGGCGGGCccgcgccggagcAGUgC-CCAGCGGGCGu -3' miRNA: 3'- aCGUUGCCCG------------UUA-GaGGUCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 100312 | 0.72 | 0.522927 |
Target: 5'- cGCGucGCGGGCGcgcucgAUCUCCAggcGCAGGUucACg -3' miRNA: 3'- aCGU--UGCCCGU------UAGAGGU---CGUCCG--UG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 20560 | 0.72 | 0.522927 |
Target: 5'- gGCGGCGGGCugcgcagCggcgCCGGC-GGCGCg -3' miRNA: 3'- aCGUUGCCCGuua----Ga---GGUCGuCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 70670 | 0.72 | 0.5129 |
Target: 5'- gGCcGCGGGCcgcacCUCCAGCcAGGCGu -3' miRNA: 3'- aCGuUGCCCGuua--GAGGUCG-UCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 98229 | 0.72 | 0.5129 |
Target: 5'- cGCGGCGGGCAucgAUUUCCGcggcccgguGC-GGCGCg -3' miRNA: 3'- aCGUUGCCCGU---UAGAGGU---------CGuCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 122835 | 0.72 | 0.502953 |
Target: 5'- cUGCGGCGcGGUcAUaCUCCAGCcGGUACu -3' miRNA: 3'- -ACGUUGC-CCGuUA-GAGGUCGuCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 17130 | 0.72 | 0.543198 |
Target: 5'- gGCGGCGGGUAcg--CCGGCGGGUcgACg -3' miRNA: 3'- aCGUUGCCCGUuagaGGUCGUCCG--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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