miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 48724 1.09 0.001858
Target:  5'- uUGCAACGGGCAAUCUCCAGCAGGCACu -3'
miRNA:   3'- -ACGUUGCCCGUUAGAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 57513 0.79 0.216098
Target:  5'- gGCGGCGGGCcuUCuUCCA-CAGGCACg -3'
miRNA:   3'- aCGUUGCCCGuuAG-AGGUcGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 12304 0.78 0.238815
Target:  5'- cGCGggcACGGGCGcgUagCCGGCGGGCGCg -3'
miRNA:   3'- aCGU---UGCCCGUuaGa-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4448 0.77 0.263494
Target:  5'- aGCAGCGGGCc--CUCCAGC-GGCGg -3'
miRNA:   3'- aCGUUGCCCGuuaGAGGUCGuCCGUg -5'
23650 3' -56.1 NC_005261.1 + 33805 0.77 0.290204
Target:  5'- gGCGGCGGGCuuGUCUuugggcggCCGGgGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGu-UAGA--------GGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 84127 0.76 0.311598
Target:  5'- gGCAGCGGGCGggGUCgCUGGCGGGCc- -3'
miRNA:   3'- aCGUUGCCCGU--UAGaGGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 59794 0.76 0.311598
Target:  5'- gGCGGCGGGCGGcaggCCGGCGuGGCGCc -3'
miRNA:   3'- aCGUUGCCCGUUaga-GGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 28443 0.75 0.349869
Target:  5'- cGCGGCcGGCcauggcGUCUcCCGGCGGGCACg -3'
miRNA:   3'- aCGUUGcCCGu-----UAGA-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 75220 0.75 0.357914
Target:  5'- gGCGGCGcuGCAG--UCCAGCGGGCGCa -3'
miRNA:   3'- aCGUUGCc-CGUUagAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 21824 0.75 0.357914
Target:  5'- cGCGGCGGGCGcgCgugCgGGCGGGCuCg -3'
miRNA:   3'- aCGUUGCCCGUuaGa--GgUCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 17816 0.75 0.374388
Target:  5'- cGCAuGCGGGCGuugcaCUCCAGCgAGGCGu -3'
miRNA:   3'- aCGU-UGCCCGUua---GAGGUCG-UCCGUg -5'
23650 3' -56.1 NC_005261.1 + 2749 0.74 0.391369
Target:  5'- cGCGGCGGGCcGUCg-CGGCGGGCc- -3'
miRNA:   3'- aCGUUGCCCGuUAGagGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 98358 0.74 0.391369
Target:  5'- gGCGGgggUGGGCGcgggCUCUGGCGGGCGCa -3'
miRNA:   3'- aCGUU---GCCCGUua--GAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 107269 0.74 0.391369
Target:  5'- gGCAcggGCGGGCGcgCaUCaggCGGCAGGCACu -3'
miRNA:   3'- aCGU---UGCCCGUuaG-AG---GUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 19567 0.74 0.400046
Target:  5'- cGcCAGCGGGCGGuugauUCUCCAG-AGGUGCg -3'
miRNA:   3'- aC-GUUGCCCGUU-----AGAGGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 113901 0.74 0.408844
Target:  5'- cGCGGCGGGCGcgAUggCCgaggcAGCGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGU--UAgaGG-----UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 53974 0.74 0.408844
Target:  5'- gGCAaaagaGCGcGGCGAgCUCCAGCGcgcGGCGCa -3'
miRNA:   3'- aCGU-----UGC-CCGUUaGAGGUCGU---CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108212 0.74 0.417762
Target:  5'- cGcCAGCacGGCGcgCUCCAGCAuGGCGCa -3'
miRNA:   3'- aC-GUUGc-CCGUuaGAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 96627 0.74 0.417762
Target:  5'- cGCAGCcgccGGGCGAUCUUCucGCAGGCc- -3'
miRNA:   3'- aCGUUG----CCCGUUAGAGGu-CGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 115177 0.74 0.417762
Target:  5'- cGCGAUGGGCAcgcgCUUCAGCAcGGCcCa -3'
miRNA:   3'- aCGUUGCCCGUua--GAGGUCGU-CCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.