miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 61520 0.74 0.426798
Target:  5'- gGCGAggccCGGGCcuUCUCCGGCAaGCGCc -3'
miRNA:   3'- aCGUU----GCCCGuuAGAGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 111408 0.74 0.426798
Target:  5'- aGCgGACGGGCGGgccacacgCCGGCGGGCAa -3'
miRNA:   3'- aCG-UUGCCCGUUaga-----GGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 27469 0.73 0.445211
Target:  5'- cGCGggGCGGGCAGgccCUCCc-CGGGCGCa -3'
miRNA:   3'- aCGU--UGCCCGUUa--GAGGucGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 66509 0.73 0.454583
Target:  5'- aGCAGCGacauuGGCGGcgccuUCUCCAGCAGcacGCGCa -3'
miRNA:   3'- aCGUUGC-----CCGUU-----AGAGGUCGUC---CGUG- -5'
23650 3' -56.1 NC_005261.1 + 54477 0.73 0.454583
Target:  5'- gGCAucCGGGC-GUCgggCGGCAGGCGCa -3'
miRNA:   3'- aCGUu-GCCCGuUAGag-GUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 14131 0.73 0.461206
Target:  5'- gGCggUGGGCAGUCgcucgcgaggacgcUCCAGCcgcgaacGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUUAG--------------AGGUCGu------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 76029 0.73 0.464061
Target:  5'- cGCcGCGGGCGccccgcgcgccAUCagcguggCCGGCGGGCGCc -3'
miRNA:   3'- aCGuUGCCCGU-----------UAGa------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 125339 0.73 0.464061
Target:  5'- cGCAGCGcGCAGggCgUCCAGCAGGCu- -3'
miRNA:   3'- aCGUUGCcCGUUa-G-AGGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 42615 0.73 0.47364
Target:  5'- cGC-GCGGcGCAAagUCCAGCGGGgACu -3'
miRNA:   3'- aCGuUGCC-CGUUagAGGUCGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 44295 0.73 0.47364
Target:  5'- aGCGGCGGGcCAGggccgCUgCCcGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCC-GUUa----GA-GGuCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 110035 0.73 0.482347
Target:  5'- cGCcuGGCGGGCAGccccacauccggcUCUCgCGGCAGGuCACc -3'
miRNA:   3'- aCG--UUGCCCGUU-------------AGAG-GUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 3426 0.73 0.483318
Target:  5'- aGCGcGCGGGCcagCgUCCAgGCGGGCGCg -3'
miRNA:   3'- aCGU-UGCCCGuuaG-AGGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 48691 0.72 0.502953
Target:  5'- gGCccGCGGGCcAUCacgCCGGCGGGCGu -3'
miRNA:   3'- aCGu-UGCCCGuUAGa--GGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 122835 0.72 0.502953
Target:  5'- cUGCGGCGcGGUcAUaCUCCAGCcGGUACu -3'
miRNA:   3'- -ACGUUGC-CCGuUA-GAGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98229 0.72 0.5129
Target:  5'- cGCGGCGGGCAucgAUUUCCGcggcccgguGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGU---UAGAGGU---------CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 70670 0.72 0.5129
Target:  5'- gGCcGCGGGCcgcacCUCCAGCcAGGCGu -3'
miRNA:   3'- aCGuUGCCCGuua--GAGGUCG-UCCGUg -5'
23650 3' -56.1 NC_005261.1 + 20560 0.72 0.522927
Target:  5'- gGCGGCGGGCugcgcagCggcgCCGGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGuua----Ga---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 100312 0.72 0.522927
Target:  5'- cGCGucGCGGGCGcgcucgAUCUCCAggcGCAGGUucACg -3'
miRNA:   3'- aCGU--UGCCCGU------UAGAGGU---CGUCCG--UG- -5'
23650 3' -56.1 NC_005261.1 + 45633 0.72 0.533028
Target:  5'- cGCGGCGGGCccgcgccggagcAGUgC-CCAGCGGGCGu -3'
miRNA:   3'- aCGUUGCCCG------------UUA-GaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 34483 0.72 0.542178
Target:  5'- cUGCGGCGGGUgcuggagugggucGAgggcgCUCUGGUGGGCACc -3'
miRNA:   3'- -ACGUUGCCCG-------------UUa----GAGGUCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.