miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 17130 0.72 0.543198
Target:  5'- gGCGGCGGGUAcg--CCGGCGGGUcgACg -3'
miRNA:   3'- aCGUUGCCCGUuagaGGUCGUCCG--UG- -5'
23650 3' -56.1 NC_005261.1 + 124027 0.71 0.552405
Target:  5'- gUGUAGcCGGGCGccUCUgagugcgcuagcgCCAGCAGGUACa -3'
miRNA:   3'- -ACGUU-GCCCGUu-AGA-------------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 117958 0.71 0.553432
Target:  5'- cUGCuACGGGCGcgCUCgCuGCcauGGGCGCg -3'
miRNA:   3'- -ACGuUGCCCGUuaGAG-GuCG---UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 11106 0.71 0.553432
Target:  5'- cGCGACGGGaCGAgaugCgCCGGCAGcGUGCg -3'
miRNA:   3'- aCGUUGCCC-GUUa---GaGGUCGUC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 125000 0.71 0.553432
Target:  5'- cGCAuacacggucCGGGCcgugcgCUCCAGCAGGCu- -3'
miRNA:   3'- aCGUu--------GCCCGuua---GAGGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 18659 0.71 0.553432
Target:  5'- gGUcuCGGGCGggCcCCAGCGGGCGa -3'
miRNA:   3'- aCGuuGCCCGUuaGaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 16054 0.71 0.553432
Target:  5'- gGCAGCGGGCccgCgCCgAGCcGGCGCg -3'
miRNA:   3'- aCGUUGCCCGuuaGaGG-UCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 97063 0.71 0.563721
Target:  5'- gGCGGCGGGCAcgauccgcGUCggaggcgCCGGCugggccggGGGCGCc -3'
miRNA:   3'- aCGUUGCCCGU--------UAGa------GGUCG--------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 91732 0.71 0.57199
Target:  5'- cGCGGCGGGCu-UCgcggcgcucacgCCGGC-GGCGCa -3'
miRNA:   3'- aCGUUGCCCGuuAGa-----------GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 79887 0.71 0.574061
Target:  5'- gGCccacaGGGCGcgCUCCuuguuuugcAGCAGGCACc -3'
miRNA:   3'- aCGuug--CCCGUuaGAGG---------UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 63040 0.71 0.583404
Target:  5'- cGCGGCGaGGCGGUCgCgCAGCAgcgccgcgucgcuGGCGCa -3'
miRNA:   3'- aCGUUGC-CCGUUAGaG-GUCGU-------------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 74282 0.71 0.594864
Target:  5'- cGCGGCGGGCGgggcgGUCgCCGcCGGGCAg -3'
miRNA:   3'- aCGUUGCCCGU-----UAGaGGUcGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 86485 0.71 0.594864
Target:  5'- cGCGGcCGGGCcggcgccuGUCUgCGGCAGGgGCu -3'
miRNA:   3'- aCGUU-GCCCGu-------UAGAgGUCGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 35915 0.71 0.594864
Target:  5'- gGCAGCGcGGCcccgCgccgcagcCCAGCGGGCGCc -3'
miRNA:   3'- aCGUUGC-CCGuua-Ga-------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 127747 0.7 0.605312
Target:  5'- gGCGGCGGGagcgggCCgcGGCGGGCGCg -3'
miRNA:   3'- aCGUUGCCCguuagaGG--UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 110217 0.7 0.605312
Target:  5'- cGCAACcucGGCGAcgcCUCCAGCGugggcGGCGCg -3'
miRNA:   3'- aCGUUGc--CCGUUa--GAGGUCGU-----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 14918 0.7 0.615781
Target:  5'- cGCAcAgGGGCAccaggAUCgacgCCAGCuGGCGCu -3'
miRNA:   3'- aCGU-UgCCCGU-----UAGa---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 41114 0.7 0.615781
Target:  5'- cGCGGCGGGCccGAgcgcUUCCuGCGuGGCGCg -3'
miRNA:   3'- aCGUUGCCCG--UUa---GAGGuCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 129596 0.7 0.615781
Target:  5'- cGCGggacACGcGGCAAUUUCgCGGCGGGguCg -3'
miRNA:   3'- aCGU----UGC-CCGUUAGAG-GUCGUCCguG- -5'
23650 3' -56.1 NC_005261.1 + 68729 0.7 0.626263
Target:  5'- cGCGGCGGGCg----CCGGCGGGaagaaGCg -3'
miRNA:   3'- aCGUUGCCCGuuagaGGUCGUCCg----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.