miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 68729 0.7 0.626263
Target:  5'- cGCGGCGGGCg----CCGGCGGGaagaaGCg -3'
miRNA:   3'- aCGUUGCCCGuuagaGGUCGUCCg----UG- -5'
23650 3' -56.1 NC_005261.1 + 135081 0.7 0.626263
Target:  5'- gGCGGCGGGCucgCggcCCGGCGGcggaGCGCg -3'
miRNA:   3'- aCGUUGCCCGuuaGa--GGUCGUC----CGUG- -5'
23650 3' -56.1 NC_005261.1 + 1514 0.7 0.63675
Target:  5'- aGCucguCGGGCGccagCUCCAGCGcGCGCc -3'
miRNA:   3'- aCGuu--GCCCGUua--GAGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 127843 0.7 0.63675
Target:  5'- aGCAGCggacgGGGCGGUCg-CGGCgccaGGGCACg -3'
miRNA:   3'- aCGUUG-----CCCGUUAGagGUCG----UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98601 0.7 0.63675
Target:  5'- gGCGGCGcccGCAAaaUCCGGCGGGUAUg -3'
miRNA:   3'- aCGUUGCc--CGUUagAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 59416 0.7 0.63675
Target:  5'- gGCGcCGGcGCuGUCgcgcggcCCGGCAGGCGCc -3'
miRNA:   3'- aCGUuGCC-CGuUAGa------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 44024 0.7 0.644089
Target:  5'- cGCGGCGGGCGGcCgCCgcgcggcggccgcgGGCGGGCAg -3'
miRNA:   3'- aCGUUGCCCGUUaGaGG--------------UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 53046 0.7 0.646185
Target:  5'- gGCAGCcgucgggaGGGCAGUgCUCCaccccggGGCGGcGCACg -3'
miRNA:   3'- aCGUUG--------CCCGUUA-GAGG-------UCGUC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 18810 0.7 0.647233
Target:  5'- gGCGGCGGGCAugauugcgcUCUCguGCucGCGCu -3'
miRNA:   3'- aCGUUGCCCGUu--------AGAGguCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 89272 0.7 0.647233
Target:  5'- gGCGACGGGCuggcguUC-CCGGCGGcCGCc -3'
miRNA:   3'- aCGUUGCCCGuu----AGaGGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 2426 0.7 0.656657
Target:  5'- gGCGGCGGGCcgcGAUCUcggCCAGCgccucggggucgaAGGCGa -3'
miRNA:   3'- aCGUUGCCCG---UUAGA---GGUCG-------------UCCGUg -5'
23650 3' -56.1 NC_005261.1 + 81449 0.7 0.657703
Target:  5'- cGCGGCGGGCGccg-CCAGCAG-CAg -3'
miRNA:   3'- aCGUUGCCCGUuagaGGUCGUCcGUg -5'
23650 3' -56.1 NC_005261.1 + 69512 0.7 0.657703
Target:  5'- gGCGGCGGGCug---CCGgagcuggcGCGGGCGCu -3'
miRNA:   3'- aCGUUGCCCGuuagaGGU--------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 1448 0.7 0.657703
Target:  5'- aGCGGCGGcgccucggcguGCGG-CUCCAGCAGcGCGg -3'
miRNA:   3'- aCGUUGCC-----------CGUUaGAGGUCGUC-CGUg -5'
23650 3' -56.1 NC_005261.1 + 99102 0.7 0.66084
Target:  5'- cGCAGCGGcuugcucGCGAUCagcgccgagagcugcUCCAGCugcgccgucAGGCACg -3'
miRNA:   3'- aCGUUGCC-------CGUUAG---------------AGGUCG---------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4563 0.69 0.668152
Target:  5'- gGCuggauccGCGGGCGGg-UCCGGCGgGGCGCc -3'
miRNA:   3'- aCGu------UGCCCGUUagAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98515 0.69 0.668152
Target:  5'- gGCGuACGGGCAggcgcgagAUCcggCCGGUAGGCuGCg -3'
miRNA:   3'- aCGU-UGCCCGU--------UAGa--GGUCGUCCG-UG- -5'
23650 3' -56.1 NC_005261.1 + 1043 0.69 0.668152
Target:  5'- gGCGGCGGGCGG-CggcgUUAGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGUUaGa---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 49127 0.69 0.668152
Target:  5'- cGCGGCGGGCGGgacCcCCGcgcGCAGGUAUu -3'
miRNA:   3'- aCGUUGCCCGUUa--GaGGU---CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 93681 0.69 0.668152
Target:  5'- gGCGGCGccGGCGGggcgCCGGCGGGUGCc -3'
miRNA:   3'- aCGUUGC--CCGUUaga-GGUCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.