miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 93920 0.66 0.841609
Target:  5'- gGCGcccGCGGGCuugCgCCGuccGCGGGCGCc -3'
miRNA:   3'- aCGU---UGCCCGuuaGaGGU---CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 54827 0.66 0.841609
Target:  5'- cGCGucauacGCGGGCAGgg-CUAGCugccGGCGCc -3'
miRNA:   3'- aCGU------UGCCCGUUagaGGUCGu---CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 58027 0.66 0.841609
Target:  5'- cGCGGC-GGCAG-CUCCAGgGaGCGCg -3'
miRNA:   3'- aCGUUGcCCGUUaGAGGUCgUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 54772 0.66 0.841609
Target:  5'- gUGCGGCGGGCGA----CAGgAcGGCGCg -3'
miRNA:   3'- -ACGUUGCCCGUUagagGUCgU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 106956 0.66 0.841609
Target:  5'- gGCc-CGGGCGcgCUCC-GCcucGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUuaGAGGuCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 107694 0.66 0.841609
Target:  5'- cGCGGCGGGgGcgccgccgaacGUCgcugCCgcGGCAGGCGg -3'
miRNA:   3'- aCGUUGCCCgU-----------UAGa---GG--UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 98074 0.66 0.841609
Target:  5'- gGCGGCGGGUguguccuuggagAAUCUgggggCgCGGCGGGCGg -3'
miRNA:   3'- aCGUUGCCCG------------UUAGA-----G-GUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 101691 0.66 0.839941
Target:  5'- gGCGaaGCGGGCGuggucgaagcgCUCCAGCu-GCGCc -3'
miRNA:   3'- aCGU--UGCCCGUua---------GAGGUCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98471 0.66 0.83319
Target:  5'- -cCGACGGGCGgccGUcCUCC-GCGGGCuCg -3'
miRNA:   3'- acGUUGCCCGU---UA-GAGGuCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 135757 0.66 0.83319
Target:  5'- aGCcGCGcGGUGcgCUCCGGCgcAGaGCGCg -3'
miRNA:   3'- aCGuUGC-CCGUuaGAGGUCG--UC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 42186 0.66 0.83319
Target:  5'- cGCAG-GGcGCGAgccgCUCCAcggcgccgcGCGGGCGCc -3'
miRNA:   3'- aCGUUgCC-CGUUa---GAGGU---------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 92454 0.66 0.83319
Target:  5'- aGCAccACGGGC-GUCgUCCGGaugagcGGCACc -3'
miRNA:   3'- aCGU--UGCCCGuUAG-AGGUCgu----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 127794 0.66 0.83319
Target:  5'- aGCGGCGGGCcggcgccgCggCGGCGGGcCGCu -3'
miRNA:   3'- aCGUUGCCCGuua-----GagGUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 121773 0.66 0.83319
Target:  5'- cGCggUGGGguGgccgCggCCGGCGGGCu- -3'
miRNA:   3'- aCGuuGCCCguUa---Ga-GGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 105270 0.66 0.83319
Target:  5'- gGCucGGCGGGCGGcagCgCCGGCgagcccGGGCGCg -3'
miRNA:   3'- aCG--UUGCCCGUUa--GaGGUCG------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 52671 0.66 0.83319
Target:  5'- cGCAcuucgaGCGGGCccugCUC--GCGGGCGCg -3'
miRNA:   3'- aCGU------UGCCCGuua-GAGguCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 59735 0.66 0.83319
Target:  5'- aGCGGCGGcGCGcggccgccCUCCAcCAGGCAg -3'
miRNA:   3'- aCGUUGCC-CGUua------GAGGUcGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 86411 0.66 0.832338
Target:  5'- aGCAgcuGCGGGCAgaacccgcacgccAUCgCCAGguGGUccaGCg -3'
miRNA:   3'- aCGU---UGCCCGU-------------UAGaGGUCguCCG---UG- -5'
23650 3' -56.1 NC_005261.1 + 64884 0.66 0.829769
Target:  5'- gGCGGCGGGagcgccgggUCCAGCAG-CGCg -3'
miRNA:   3'- aCGUUGCCCguuag----AGGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 3509 0.67 0.82458
Target:  5'- cGcCAGCGcGGCcgcCUCCAGCGcGGCGg -3'
miRNA:   3'- aC-GUUGC-CCGuuaGAGGUCGU-CCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.