miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 46106 0.67 0.82458
Target:  5'- gGCcGgGGGCcguGGUCcgcgUCCAGCAGGuCGCc -3'
miRNA:   3'- aCGuUgCCCG---UUAG----AGGUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 63964 0.67 0.82458
Target:  5'- cGCAGCuGGuGC-GUCagcgCCAGCGGGCuCa -3'
miRNA:   3'- aCGUUG-CC-CGuUAGa---GGUCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 3509 0.67 0.82458
Target:  5'- cGcCAGCGcGGCcgcCUCCAGCGcGGCGg -3'
miRNA:   3'- aC-GUUGC-CCGuuaGAGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 28253 0.67 0.815785
Target:  5'- aGCGG-GGGCug-CUCgGGgGGGCGCu -3'
miRNA:   3'- aCGUUgCCCGuuaGAGgUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 56806 0.67 0.815785
Target:  5'- gGCAGCGGGCcacggugUUCCuggugccgcGGC-GGCACg -3'
miRNA:   3'- aCGUUGCCCGuua----GAGG---------UCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4141 0.67 0.815785
Target:  5'- cUGC-ACGcGCcg-CUgCAGCAGGCGCg -3'
miRNA:   3'- -ACGuUGCcCGuuaGAgGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 71074 0.67 0.810424
Target:  5'- cGCGGCGGGCGGggcgUCCGGgcccgagaaggcguaCAcGGCGCg -3'
miRNA:   3'- aCGUUGCCCGUUag--AGGUC---------------GU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 137029 0.67 0.80772
Target:  5'- aGCAGaacggcgucgguggaGGGCGGaCcgUCGGCAGGCGCg -3'
miRNA:   3'- aCGUUg--------------CCCGUUaGa-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 107610 0.67 0.806816
Target:  5'- gGCAGCGGGCAcagCgUCCGugcGCGGGaACu -3'
miRNA:   3'- aCGUUGCCCGUua-G-AGGU---CGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 97628 0.67 0.806816
Target:  5'- gGCGgaGCGGGCGG-----AGCGGGCGCg -3'
miRNA:   3'- aCGU--UGCCCGUUagaggUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 36591 0.67 0.806816
Target:  5'- cGCGGCcaccggggggGGGCAGcgCUCCuGCGccccGGCGCa -3'
miRNA:   3'- aCGUUG----------CCCGUUa-GAGGuCGU----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 19489 0.67 0.806816
Target:  5'- -cCGAUGGGCGA--UCCGGCGGGaguGCa -3'
miRNA:   3'- acGUUGCCCGUUagAGGUCGUCCg--UG- -5'
23650 3' -56.1 NC_005261.1 + 106658 0.67 0.806816
Target:  5'- cGCucgcCGGcGCGGUCgUCCAGCGcGCGCc -3'
miRNA:   3'- aCGuu--GCC-CGUUAG-AGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 124245 0.67 0.806816
Target:  5'- cGCcGCGGGCAGgcgCCGcGC-GGCGCc -3'
miRNA:   3'- aCGuUGCCCGUUagaGGU-CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 76563 0.67 0.801353
Target:  5'- gGCGACgaGGGCGAgCUCguccucacgcgcgagCGGguGGCGCg -3'
miRNA:   3'- aCGUUG--CCCGUUaGAG---------------GUCguCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 118680 0.67 0.7986
Target:  5'- gGCGGCGGGCGcuggCgcacgcgcggcguggUCCugcucagcgucgcgGGCGGGCACg -3'
miRNA:   3'- aCGUUGCCCGUua--G---------------AGG--------------UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98985 0.67 0.79768
Target:  5'- aGC-ACGucguccucGGCAAUCUUCAGCGucgcgagcggcGGCGCg -3'
miRNA:   3'- aCGuUGC--------CCGUUAGAGGUCGU-----------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 73278 0.67 0.79768
Target:  5'- aGUAGCGGGCGAagggguagCacaGGCAGGCGg -3'
miRNA:   3'- aCGUUGCCCGUUaga-----Gg--UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 57544 0.67 0.79768
Target:  5'- gGCGcACGGGCAcacGUCgcacgcgcCCGGCuccGGCGCc -3'
miRNA:   3'- aCGU-UGCCCGU---UAGa-------GGUCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 48455 0.67 0.796757
Target:  5'- cGCGGcCGGcGCGGUCaacgccggccgagUCCAGCAGgGCGa -3'
miRNA:   3'- aCGUU-GCC-CGUUAG-------------AGGUCGUC-CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.