miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 48455 0.67 0.796757
Target:  5'- cGCGGcCGGcGCGGUCaacgccggccgagUCCAGCAGgGCGa -3'
miRNA:   3'- aCGUU-GCC-CGUUAG-------------AGGUCGUC-CGUg -5'
23650 3' -56.1 NC_005261.1 + 2632 0.67 0.795834
Target:  5'- gGCAugGGGCccagcacgCgGGCGGGCAg -3'
miRNA:   3'- aCGUugCCCGuuaga---GgUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 83130 0.67 0.788387
Target:  5'- cGCGcGCGcGGCAcgC-CCuGCAGGUGCg -3'
miRNA:   3'- aCGU-UGC-CCGUuaGaGGuCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 63083 0.67 0.788387
Target:  5'- aGCGGCGGGUAcgcCUCCuggaagAGCGcGCACg -3'
miRNA:   3'- aCGUUGCCCGUua-GAGG------UCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108004 0.67 0.788387
Target:  5'- cGCcguCGGGCAGcC-CCAGCAGcggcaGCACg -3'
miRNA:   3'- aCGuu-GCCCGUUaGaGGUCGUC-----CGUG- -5'
23650 3' -56.1 NC_005261.1 + 4500 0.67 0.788387
Target:  5'- cUGC-GCGGGCcccAGUCgcgcgcCCGcGCGGGCGCc -3'
miRNA:   3'- -ACGuUGCCCG---UUAGa-----GGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 113011 0.67 0.788387
Target:  5'- aUGCugGGCGGGCAGUaccCCacagAGCGGGcCGCg -3'
miRNA:   3'- -ACG--UUGCCCGUUAga-GG----UCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 52970 0.67 0.788387
Target:  5'- cGCGcCGGuGCGGcg-CCGGCAGGCGg -3'
miRNA:   3'- aCGUuGCC-CGUUagaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 98199 0.67 0.787449
Target:  5'- cGCGGCGGGC-------AGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCCGuuagaggUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 34386 0.67 0.787449
Target:  5'- cGCAgacGCGGcGCAggaguuuAUCgaCCGGguGGCGCg -3'
miRNA:   3'- aCGU---UGCC-CGU-------UAGa-GGUCguCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98670 0.67 0.778946
Target:  5'- gGCGA-GGGCGggCUCCgccggGGCcggAGGCGCg -3'
miRNA:   3'- aCGUUgCCCGUuaGAGG-----UCG---UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 1936 0.67 0.778946
Target:  5'- cGCcGCGGGCAG-CaCCGcggcgcGCAGGUACa -3'
miRNA:   3'- aCGuUGCCCGUUaGaGGU------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108453 0.67 0.777995
Target:  5'- aGCAGCGcgucgucGGCGAggaUCUCCGcGUcGGCGCg -3'
miRNA:   3'- aCGUUGC-------CCGUU---AGAGGU-CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 60892 0.68 0.769368
Target:  5'- cGCGGCGGGCGAgcaguuccugcUCUaCCGGCccuccacGGCGg -3'
miRNA:   3'- aCGUUGCCCGUU-----------AGA-GGUCGu------CCGUg -5'
23650 3' -56.1 NC_005261.1 + 49338 0.68 0.769368
Target:  5'- -uCGACGcGGUuguUCUCCAGCAG-CGCg -3'
miRNA:   3'- acGUUGC-CCGuu-AGAGGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 68283 0.68 0.769368
Target:  5'- cGCGGCGGGg---CcCCGGCcgcGGGCGCg -3'
miRNA:   3'- aCGUUGCCCguuaGaGGUCG---UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 23254 0.68 0.769368
Target:  5'- cUGCu-CGGGCGAgagCUgCAGCAGcgccucccaGCACg -3'
miRNA:   3'- -ACGuuGCCCGUUa--GAgGUCGUC---------CGUG- -5'
23650 3' -56.1 NC_005261.1 + 54291 0.68 0.760637
Target:  5'- gGCGuuucGCGGGCGccgguuaacaccagCUCCAGCAaGGCGu -3'
miRNA:   3'- aCGU----UGCCCGUua------------GAGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 49073 0.68 0.759661
Target:  5'- cGCGaaGCGGGCAcgCgCC-GCGGGCcCg -3'
miRNA:   3'- aCGU--UGCCCGUuaGaGGuCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 85540 0.68 0.749835
Target:  5'- cGCGcGCGGGCGG-CUCCGucuGC-GGCGCc -3'
miRNA:   3'- aCGU-UGCCCGUUaGAGGU---CGuCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.