miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 3554 0.68 0.749835
Target:  5'- cGCGGCGGGCGcggCgCC-GCuaAGGCGCg -3'
miRNA:   3'- aCGUUGCCCGUua-GaGGuCG--UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 13097 0.68 0.749835
Target:  5'- gGCGGCGGGCucggCUCgggggcgucggCGGCcgcgGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGuua-GAG-----------GUCG----UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 85540 0.68 0.749835
Target:  5'- cGCGcGCGGGCGG-CUCCGucuGC-GGCGCc -3'
miRNA:   3'- aCGU-UGCCCGUUaGAGGU---CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 125295 0.68 0.749835
Target:  5'- gGCcGCGGGCGccggaCCcGCGGGCGCu -3'
miRNA:   3'- aCGuUGCCCGUuaga-GGuCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 9641 0.68 0.749835
Target:  5'- gGCugggUGGGCGGggcccaCUCgGGCGGGCGCc -3'
miRNA:   3'- aCGuu--GCCCGUUa-----GAGgUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 64488 0.68 0.739901
Target:  5'- gUGCAGCGGGUGGcgcgggugcUCggggCCcGCGGGCGg -3'
miRNA:   3'- -ACGUUGCCCGUU---------AGa---GGuCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 103474 0.68 0.739901
Target:  5'- cGCca-GGGCG---UCCAGCuGGCGCa -3'
miRNA:   3'- aCGuugCCCGUuagAGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 47346 0.68 0.739901
Target:  5'- gGCGACGacGCAGUCgaagCCGaCGGGCACc -3'
miRNA:   3'- aCGUUGCc-CGUUAGa---GGUcGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 64986 0.68 0.739901
Target:  5'- cGCAGCGcGuGCAGgugCUCCAGgAGGUc- -3'
miRNA:   3'- aCGUUGC-C-CGUUa--GAGGUCgUCCGug -5'
23650 3' -56.1 NC_005261.1 + 108779 0.68 0.739901
Target:  5'- gGCAccAUGGGCAccUUCCAGUuGGCAg -3'
miRNA:   3'- aCGU--UGCCCGUuaGAGGUCGuCCGUg -5'
23650 3' -56.1 NC_005261.1 + 123013 0.68 0.729868
Target:  5'- cGCGGcCGuGGCGuccgcgagcGUCggCAGCAGGCACc -3'
miRNA:   3'- aCGUU-GC-CCGU---------UAGagGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 59004 0.68 0.729868
Target:  5'- gUGCGcCGGGCucgC-CCAGC-GGCGCc -3'
miRNA:   3'- -ACGUuGCCCGuuaGaGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 15253 0.69 0.709546
Target:  5'- cGCAGUGGGCcgcGAUCgccCCGGC-GGCGCc -3'
miRNA:   3'- aCGUUGCCCG---UUAGa--GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 5515 0.69 0.709546
Target:  5'- gGCAGCGgcGGCGAggccgCCGGCuucGGCGCg -3'
miRNA:   3'- aCGUUGC--CCGUUaga--GGUCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 109872 0.69 0.699277
Target:  5'- gGCAGCGGGgcccg-CgGGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCCguuagaGgUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 23486 0.69 0.699277
Target:  5'- gUGC-GCGGGCccg--CCugGGCAGGCGCg -3'
miRNA:   3'- -ACGuUGCCCGuuagaGG--UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 49031 0.69 0.698246
Target:  5'- gGCGGCGGGCAcgCgcaGGCAGccgccgaGCACg -3'
miRNA:   3'- aCGUUGCCCGUuaGaggUCGUC-------CGUG- -5'
23650 3' -56.1 NC_005261.1 + 127637 0.69 0.688948
Target:  5'- cGCGACGgcGGCGGcg-CCGGgGGGCGCg -3'
miRNA:   3'- aCGUUGC--CCGUUagaGGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 3785 0.69 0.688948
Target:  5'- cGCAGCGcaGCGGUCcgCCAGCucGCGCa -3'
miRNA:   3'- aCGUUGCc-CGUUAGa-GGUCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 90212 0.69 0.688948
Target:  5'- gGCGGCGGaGCGcccUCgcgcggCgGGCGGGCGCg -3'
miRNA:   3'- aCGUUGCC-CGUu--AGa-----GgUCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.