miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 1043 0.69 0.668152
Target:  5'- gGCGGCGGGCGG-CggcgUUAGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGUUaGa---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 1448 0.7 0.657703
Target:  5'- aGCGGCGGcgccucggcguGCGG-CUCCAGCAGcGCGg -3'
miRNA:   3'- aCGUUGCC-----------CGUUaGAGGUCGUC-CGUg -5'
23650 3' -56.1 NC_005261.1 + 1514 0.7 0.63675
Target:  5'- aGCucguCGGGCGccagCUCCAGCGcGCGCc -3'
miRNA:   3'- aCGuu--GCCCGUua--GAGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 1936 0.67 0.778946
Target:  5'- cGCcGCGGGCAG-CaCCGcggcgcGCAGGUACa -3'
miRNA:   3'- aCGuUGCCCGUUaGaGGU------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 2426 0.7 0.656657
Target:  5'- gGCGGCGGGCcgcGAUCUcggCCAGCgccucggggucgaAGGCGa -3'
miRNA:   3'- aCGUUGCCCG---UUAGA---GGUCG-------------UCCGUg -5'
23650 3' -56.1 NC_005261.1 + 2632 0.67 0.795834
Target:  5'- gGCAugGGGCccagcacgCgGGCGGGCAg -3'
miRNA:   3'- aCGUugCCCGuuaga---GgUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 2749 0.74 0.391369
Target:  5'- cGCGGCGGGCcGUCg-CGGCGGGCc- -3'
miRNA:   3'- aCGUUGCCCGuUAGagGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 3426 0.73 0.483318
Target:  5'- aGCGcGCGGGCcagCgUCCAgGCGGGCGCg -3'
miRNA:   3'- aCGU-UGCCCGuuaG-AGGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 3509 0.67 0.82458
Target:  5'- cGcCAGCGcGGCcgcCUCCAGCGcGGCGg -3'
miRNA:   3'- aC-GUUGC-CCGuuaGAGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 3554 0.68 0.749835
Target:  5'- cGCGGCGGGCGcggCgCC-GCuaAGGCGCg -3'
miRNA:   3'- aCGUUGCCCGUua-GaGGuCG--UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 3785 0.69 0.688948
Target:  5'- cGCAGCGcaGCGGUCcgCCAGCucGCGCa -3'
miRNA:   3'- aCGUUGCc-CGUUAGa-GGUCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4141 0.67 0.815785
Target:  5'- cUGC-ACGcGCcg-CUgCAGCAGGCGCg -3'
miRNA:   3'- -ACGuUGCcCGuuaGAgGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4448 0.77 0.263494
Target:  5'- aGCAGCGGGCc--CUCCAGC-GGCGg -3'
miRNA:   3'- aCGUUGCCCGuuaGAGGUCGuCCGUg -5'
23650 3' -56.1 NC_005261.1 + 4500 0.67 0.788387
Target:  5'- cUGC-GCGGGCcccAGUCgcgcgcCCGcGCGGGCGCc -3'
miRNA:   3'- -ACGuUGCCCG---UUAGa-----GGU-CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 4563 0.69 0.668152
Target:  5'- gGCuggauccGCGGGCGGg-UCCGGCGgGGCGCc -3'
miRNA:   3'- aCGu------UGCCCGUUagAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 5515 0.69 0.709546
Target:  5'- gGCAGCGgcGGCGAggccgCCGGCuucGGCGCg -3'
miRNA:   3'- aCGUUGC--CCGUUaga--GGUCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 6433 0.66 0.849828
Target:  5'- cGCGA-GGGCGGUCcgggggCCGGcCGGGCu- -3'
miRNA:   3'- aCGUUgCCCGUUAGa-----GGUC-GUCCGug -5'
23650 3' -56.1 NC_005261.1 + 7882 0.69 0.67857
Target:  5'- gGCAGCGagcGGCucugUUCCGGCGcGGCGCc -3'
miRNA:   3'- aCGUUGC---CCGuua-GAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 9641 0.68 0.749835
Target:  5'- gGCugggUGGGCGGggcccaCUCgGGCGGGCGCc -3'
miRNA:   3'- aCGuu--GCCCGUUa-----GAGgUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 10587 0.66 0.865637
Target:  5'- aUGCGACGugagcGGCAGcgaCUCCAGCA-GCGa -3'
miRNA:   3'- -ACGUUGC-----CCGUUa--GAGGUCGUcCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.