miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 11106 0.71 0.553432
Target:  5'- cGCGACGGGaCGAgaugCgCCGGCAGcGUGCg -3'
miRNA:   3'- aCGUUGCCC-GUUa---GaGGUCGUC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 12304 0.78 0.238815
Target:  5'- cGCGggcACGGGCGcgUagCCGGCGGGCGCg -3'
miRNA:   3'- aCGU---UGCCCGUuaGa-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 13097 0.68 0.749835
Target:  5'- gGCGGCGGGCucggCUCgggggcgucggCGGCcgcgGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGuua-GAG-----------GUCG----UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 14131 0.73 0.461206
Target:  5'- gGCggUGGGCAGUCgcucgcgaggacgcUCCAGCcgcgaacGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUUAG--------------AGGUCGu------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 14918 0.7 0.615781
Target:  5'- cGCAcAgGGGCAccaggAUCgacgCCAGCuGGCGCu -3'
miRNA:   3'- aCGU-UgCCCGU-----UAGa---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 15253 0.69 0.709546
Target:  5'- cGCAGUGGGCcgcGAUCgccCCGGC-GGCGCc -3'
miRNA:   3'- aCGUUGCCCG---UUAGa--GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 15499 0.69 0.67857
Target:  5'- cGCuGCGGGCGgggcguguGUCggCguGCAGGCAg -3'
miRNA:   3'- aCGuUGCCCGU--------UAGa-GguCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 16054 0.71 0.553432
Target:  5'- gGCAGCGGGCccgCgCCgAGCcGGCGCg -3'
miRNA:   3'- aCGUUGCCCGuuaGaGG-UCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 17130 0.72 0.543198
Target:  5'- gGCGGCGGGUAcg--CCGGCGGGUcgACg -3'
miRNA:   3'- aCGUUGCCCGUuagaGGUCGUCCG--UG- -5'
23650 3' -56.1 NC_005261.1 + 17816 0.75 0.374388
Target:  5'- cGCAuGCGGGCGuugcaCUCCAGCgAGGCGu -3'
miRNA:   3'- aCGU-UGCCCGUua---GAGGUCG-UCCGUg -5'
23650 3' -56.1 NC_005261.1 + 18659 0.71 0.553432
Target:  5'- gGUcuCGGGCGggCcCCAGCGGGCGa -3'
miRNA:   3'- aCGuuGCCCGUuaGaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 18810 0.7 0.647233
Target:  5'- gGCGGCGGGCAugauugcgcUCUCguGCucGCGCu -3'
miRNA:   3'- aCGUUGCCCGUu--------AGAGguCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 19489 0.67 0.806816
Target:  5'- -cCGAUGGGCGA--UCCGGCGGGaguGCa -3'
miRNA:   3'- acGUUGCCCGUUagAGGUCGUCCg--UG- -5'
23650 3' -56.1 NC_005261.1 + 19567 0.74 0.400046
Target:  5'- cGcCAGCGGGCGGuugauUCUCCAG-AGGUGCg -3'
miRNA:   3'- aC-GUUGCCCGUU-----AGAGGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 20560 0.72 0.522927
Target:  5'- gGCGGCGGGCugcgcagCggcgCCGGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGuua----Ga---GGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 20851 0.66 0.85784
Target:  5'- gGCAGCGuGGCGG-CUCUugcgccGCGGGC-Cg -3'
miRNA:   3'- aCGUUGC-CCGUUaGAGGu-----CGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 21824 0.75 0.357914
Target:  5'- cGCGGCGGGCGcgCgugCgGGCGGGCuCg -3'
miRNA:   3'- aCGUUGCCCGUuaGa--GgUCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 22704 0.66 0.860202
Target:  5'- gGCGACGaGGCcGUCgaggagccggaggaCCAGCgccagucGGGCGCg -3'
miRNA:   3'- aCGUUGC-CCGuUAGa-------------GGUCG-------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 23254 0.68 0.769368
Target:  5'- cUGCu-CGGGCGAgagCUgCAGCAGcgccucccaGCACg -3'
miRNA:   3'- -ACGuuGCCCGUUa--GAgGUCGUC---------CGUG- -5'
23650 3' -56.1 NC_005261.1 + 23486 0.69 0.699277
Target:  5'- gUGC-GCGGGCccg--CCugGGCAGGCGCg -3'
miRNA:   3'- -ACGuUGCCCGuuagaGG--UCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.