miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 26098 0.66 0.841609
Target:  5'- gGCAGCaGaGGCAga-UCCAGCggccggguaagcAGGCGCg -3'
miRNA:   3'- aCGUUG-C-CCGUuagAGGUCG------------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 27469 0.73 0.445211
Target:  5'- cGCGggGCGGGCAGgccCUCCc-CGGGCGCa -3'
miRNA:   3'- aCGU--UGCCCGUUa--GAGGucGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 28253 0.67 0.815785
Target:  5'- aGCGG-GGGCug-CUCgGGgGGGCGCu -3'
miRNA:   3'- aCGUUgCCCGuuaGAGgUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 28443 0.75 0.349869
Target:  5'- cGCGGCcGGCcauggcGUCUcCCGGCGGGCACg -3'
miRNA:   3'- aCGUUGcCCGu-----UAGA-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 29543 0.68 0.749835
Target:  5'- aGCucGCGGGCccgGAcCUgCAGCuGGCGCg -3'
miRNA:   3'- aCGu-UGCCCG---UUaGAgGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 29972 0.66 0.865637
Target:  5'- gGCGGCGcGGUGcgCcgccggcgcgUCCGGCAgcGGCGCg -3'
miRNA:   3'- aCGUUGC-CCGUuaG----------AGGUCGU--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 31312 0.66 0.85784
Target:  5'- cGCGgggcccGCGGGCGcgCUcgccgCCAGCGcgccgcugcggcGGCGCg -3'
miRNA:   3'- aCGU------UGCCCGUuaGA-----GGUCGU------------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 31493 0.69 0.688948
Target:  5'- cGCGGCGGGCucUCgcaCCuGCucgcGGCGCu -3'
miRNA:   3'- aCGUUGCCCGuuAGa--GGuCGu---CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 32424 0.69 0.686876
Target:  5'- gGCGACGGGagccccgCCGGCcuGGGCGCc -3'
miRNA:   3'- aCGUUGCCCguuaga-GGUCG--UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 33805 0.77 0.290204
Target:  5'- gGCGGCGGGCuuGUCUuugggcggCCGGgGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGu-UAGA--------GGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 34386 0.67 0.787449
Target:  5'- cGCAgacGCGGcGCAggaguuuAUCgaCCGGguGGCGCg -3'
miRNA:   3'- aCGU---UGCC-CGU-------UAGa-GGUCguCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 34483 0.72 0.542178
Target:  5'- cUGCGGCGGGUgcuggagugggucGAgggcgCUCUGGUGGGCACc -3'
miRNA:   3'- -ACGUUGCCCG-------------UUa----GAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 35915 0.71 0.594864
Target:  5'- gGCAGCGcGGCcccgCgccgcagcCCAGCGGGCGCc -3'
miRNA:   3'- aCGUUGC-CCGuua-Ga-------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 36591 0.67 0.806816
Target:  5'- cGCGGCcaccggggggGGGCAGcgCUCCuGCGccccGGCGCa -3'
miRNA:   3'- aCGUUG----------CCCGUUa-GAGGuCGU----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 41114 0.7 0.615781
Target:  5'- cGCGGCGGGCccGAgcgcUUCCuGCGuGGCGCg -3'
miRNA:   3'- aCGUUGCCCG--UUa---GAGGuCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 42186 0.66 0.83319
Target:  5'- cGCAG-GGcGCGAgccgCUCCAcggcgccgcGCGGGCGCc -3'
miRNA:   3'- aCGUUgCC-CGUUa---GAGGU---------CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 42615 0.73 0.47364
Target:  5'- cGC-GCGGcGCAAagUCCAGCGGGgACu -3'
miRNA:   3'- aCGuUGCC-CGUUagAGGUCGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 42674 0.66 0.849828
Target:  5'- gGCGGcCGGGCcgccgCCGGCAGccGCGCg -3'
miRNA:   3'- aCGUU-GCCCGuuagaGGUCGUC--CGUG- -5'
23650 3' -56.1 NC_005261.1 + 44024 0.7 0.644089
Target:  5'- cGCGGCGGGCGGcCgCCgcgcggcggccgcgGGCGGGCAg -3'
miRNA:   3'- aCGUUGCCCGUUaGaGG--------------UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 44295 0.73 0.47364
Target:  5'- aGCGGCGGGcCAGggccgCUgCCcGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCC-GUUa----GA-GGuCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.