miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 45633 0.72 0.533028
Target:  5'- cGCGGCGGGCccgcgccggagcAGUgC-CCAGCGGGCGu -3'
miRNA:   3'- aCGUUGCCCG------------UUA-GaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 46011 0.69 0.67857
Target:  5'- cGCGGCaGGCGAUgUCCgggAGCAGG-ACg -3'
miRNA:   3'- aCGUUGcCCGUUAgAGG---UCGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 46106 0.67 0.82458
Target:  5'- gGCcGgGGGCcguGGUCcgcgUCCAGCAGGuCGCc -3'
miRNA:   3'- aCGuUgCCCG---UUAG----AGGUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 47346 0.68 0.739901
Target:  5'- gGCGACGacGCAGUCgaagCCGaCGGGCACc -3'
miRNA:   3'- aCGUUGCc-CGUUAGa---GGUcGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 48455 0.67 0.796757
Target:  5'- cGCGGcCGGcGCGGUCaacgccggccgagUCCAGCAGgGCGa -3'
miRNA:   3'- aCGUU-GCC-CGUUAG-------------AGGUCGUC-CGUg -5'
23650 3' -56.1 NC_005261.1 + 48691 0.72 0.502953
Target:  5'- gGCccGCGGGCcAUCacgCCGGCGGGCGu -3'
miRNA:   3'- aCGu-UGCCCGuUAGa--GGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 48724 1.09 0.001858
Target:  5'- uUGCAACGGGCAAUCUCCAGCAGGCACu -3'
miRNA:   3'- -ACGUUGCCCGUUAGAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 49031 0.69 0.698246
Target:  5'- gGCGGCGGGCAcgCgcaGGCAGccgccgaGCACg -3'
miRNA:   3'- aCGUUGCCCGUuaGaggUCGUC-------CGUG- -5'
23650 3' -56.1 NC_005261.1 + 49073 0.68 0.759661
Target:  5'- cGCGaaGCGGGCAcgCgCC-GCGGGCcCg -3'
miRNA:   3'- aCGU--UGCCCGUuaGaGGuCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 49127 0.69 0.668152
Target:  5'- cGCGGCGGGCGGgacCcCCGcgcGCAGGUAUu -3'
miRNA:   3'- aCGUUGCCCGUUa--GaGGU---CGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 49338 0.68 0.769368
Target:  5'- -uCGACGcGGUuguUCUCCAGCAG-CGCg -3'
miRNA:   3'- acGUUGC-CCGuu-AGAGGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 50641 0.66 0.85784
Target:  5'- gGCGGCGGGguGgcgCCGGCGaacGCGCu -3'
miRNA:   3'- aCGUUGCCCguUagaGGUCGUc--CGUG- -5'
23650 3' -56.1 NC_005261.1 + 52671 0.66 0.83319
Target:  5'- cGCAcuucgaGCGGGCccugCUC--GCGGGCGCg -3'
miRNA:   3'- aCGU------UGCCCGuua-GAGguCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 52970 0.67 0.788387
Target:  5'- cGCGcCGGuGCGGcg-CCGGCAGGCGg -3'
miRNA:   3'- aCGUuGCC-CGUUagaGGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 53046 0.7 0.646185
Target:  5'- gGCAGCcgucgggaGGGCAGUgCUCCaccccggGGCGGcGCACg -3'
miRNA:   3'- aCGUUG--------CCCGUUA-GAGG-------UCGUC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 53463 0.69 0.67857
Target:  5'- cGC--CGGGCGGgacgCAGCAGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUUagagGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 53849 0.69 0.668152
Target:  5'- aGCccuuCcGGCAAgcgCUCCAGCGcGGCGCg -3'
miRNA:   3'- aCGuu--GcCCGUUa--GAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 53974 0.74 0.408844
Target:  5'- gGCAaaagaGCGcGGCGAgCUCCAGCGcgcGGCGCa -3'
miRNA:   3'- aCGU-----UGC-CCGUUaGAGGUCGU---CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 54291 0.68 0.760637
Target:  5'- gGCGuuucGCGGGCGccgguuaacaccagCUCCAGCAaGGCGu -3'
miRNA:   3'- aCGU----UGCCCGUua------------GAGGUCGU-CCGUg -5'
23650 3' -56.1 NC_005261.1 + 54477 0.73 0.454583
Target:  5'- gGCAucCGGGC-GUCgggCGGCAGGCGCa -3'
miRNA:   3'- aCGUu-GCCCGuUAGag-GUCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.