miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 137029 0.67 0.80772
Target:  5'- aGCAGaacggcgucgguggaGGGCGGaCcgUCGGCAGGCGCg -3'
miRNA:   3'- aCGUUg--------------CCCGUUaGa-GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 135757 0.66 0.83319
Target:  5'- aGCcGCGcGGUGcgCUCCGGCgcAGaGCGCg -3'
miRNA:   3'- aCGuUGC-CCGUuaGAGGUCG--UC-CGUG- -5'
23650 3' -56.1 NC_005261.1 + 135081 0.7 0.626263
Target:  5'- gGCGGCGGGCucgCggcCCGGCGGcggaGCGCg -3'
miRNA:   3'- aCGUUGCCCGuuaGa--GGUCGUC----CGUG- -5'
23650 3' -56.1 NC_005261.1 + 129596 0.7 0.615781
Target:  5'- cGCGggacACGcGGCAAUUUCgCGGCGGGguCg -3'
miRNA:   3'- aCGU----UGC-CCGUUAGAG-GUCGUCCguG- -5'
23650 3' -56.1 NC_005261.1 + 127843 0.7 0.63675
Target:  5'- aGCAGCggacgGGGCGGUCg-CGGCgccaGGGCACg -3'
miRNA:   3'- aCGUUG-----CCCGUUAGagGUCG----UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 127794 0.66 0.83319
Target:  5'- aGCGGCGGGCcggcgccgCggCGGCGGGcCGCu -3'
miRNA:   3'- aCGUUGCCCGuua-----GagGUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 127747 0.7 0.605312
Target:  5'- gGCGGCGGGagcgggCCgcGGCGGGCGCg -3'
miRNA:   3'- aCGUUGCCCguuagaGG--UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 127637 0.69 0.688948
Target:  5'- cGCGACGgcGGCGGcg-CCGGgGGGCGCg -3'
miRNA:   3'- aCGUUGC--CCGUUagaGGUCgUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 125639 0.66 0.841609
Target:  5'- aGCAGCugguugaGGCGGUCccCCAGCAG-CGCg -3'
miRNA:   3'- aCGUUGc------CCGUUAGa-GGUCGUCcGUG- -5'
23650 3' -56.1 NC_005261.1 + 125339 0.73 0.464061
Target:  5'- cGCAGCGcGCAGggCgUCCAGCAGGCu- -3'
miRNA:   3'- aCGUUGCcCGUUa-G-AGGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 125295 0.68 0.749835
Target:  5'- gGCcGCGGGCGccggaCCcGCGGGCGCu -3'
miRNA:   3'- aCGuUGCCCGUuaga-GGuCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 125000 0.71 0.553432
Target:  5'- cGCAuacacggucCGGGCcgugcgCUCCAGCAGGCu- -3'
miRNA:   3'- aCGUu--------GCCCGuua---GAGGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 124545 0.7 0.626263
Target:  5'- aUGCGGCGuaccGGCcAUCUCC--CAGGCGCg -3'
miRNA:   3'- -ACGUUGC----CCGuUAGAGGucGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 124245 0.67 0.806816
Target:  5'- cGCcGCGGGCAGgcgCCGcGC-GGCGCc -3'
miRNA:   3'- aCGuUGCCCGUUagaGGU-CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 124027 0.71 0.552405
Target:  5'- gUGUAGcCGGGCGccUCUgagugcgcuagcgCCAGCAGGUACa -3'
miRNA:   3'- -ACGUU-GCCCGUu-AGA-------------GGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 123013 0.68 0.729868
Target:  5'- cGCGGcCGuGGCGuccgcgagcGUCggCAGCAGGCACc -3'
miRNA:   3'- aCGUU-GC-CCGU---------UAGagGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 122835 0.72 0.502953
Target:  5'- cUGCGGCGcGGUcAUaCUCCAGCcGGUACu -3'
miRNA:   3'- -ACGUUGC-CCGuUA-GAGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 121773 0.66 0.83319
Target:  5'- cGCggUGGGguGgccgCggCCGGCGGGCu- -3'
miRNA:   3'- aCGuuGCCCguUa---Ga-GGUCGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 118680 0.67 0.7986
Target:  5'- gGCGGCGGGCGcuggCgcacgcgcggcguggUCCugcucagcgucgcgGGCGGGCACg -3'
miRNA:   3'- aCGUUGCCCGUua--G---------------AGG--------------UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 117958 0.71 0.553432
Target:  5'- cUGCuACGGGCGcgCUCgCuGCcauGGGCGCg -3'
miRNA:   3'- -ACGuUGCCCGUuaGAG-GuCG---UCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.