miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 116519 0.66 0.849828
Target:  5'- cGCGGCGGcGCGAggcccgccgCUCCGcGCccGCGCg -3'
miRNA:   3'- aCGUUGCC-CGUUa--------GAGGU-CGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 115177 0.74 0.417762
Target:  5'- cGCGAUGGGCAcgcgCUUCAGCAcGGCcCa -3'
miRNA:   3'- aCGUUGCCCGUua--GAGGUCGU-CCGuG- -5'
23650 3' -56.1 NC_005261.1 + 113901 0.74 0.408844
Target:  5'- cGCGGCGGGCGcgAUggCCgaggcAGCGGGCGCg -3'
miRNA:   3'- aCGUUGCCCGU--UAgaGG-----UCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 113011 0.67 0.788387
Target:  5'- aUGCugGGCGGGCAGUaccCCacagAGCGGGcCGCg -3'
miRNA:   3'- -ACG--UUGCCCGUUAga-GG----UCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 111408 0.74 0.426798
Target:  5'- aGCgGACGGGCGGgccacacgCCGGCGGGCAa -3'
miRNA:   3'- aCG-UUGCCCGUUaga-----GGUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 110217 0.7 0.605312
Target:  5'- cGCAACcucGGCGAcgcCUCCAGCGugggcGGCGCg -3'
miRNA:   3'- aCGUUGc--CCGUUa--GAGGUCGU-----CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 110035 0.73 0.482347
Target:  5'- cGCcuGGCGGGCAGccccacauccggcUCUCgCGGCAGGuCACc -3'
miRNA:   3'- aCG--UUGCCCGUU-------------AGAG-GUCGUCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 109872 0.69 0.699277
Target:  5'- gGCAGCGGGgcccg-CgGGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCCguuagaGgUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108779 0.68 0.739901
Target:  5'- gGCAccAUGGGCAccUUCCAGUuGGCAg -3'
miRNA:   3'- aCGU--UGCCCGUuaGAGGUCGuCCGUg -5'
23650 3' -56.1 NC_005261.1 + 108453 0.67 0.777995
Target:  5'- aGCAGCGcgucgucGGCGAggaUCUCCGcGUcGGCGCg -3'
miRNA:   3'- aCGUUGC-------CCGUU---AGAGGU-CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108212 0.74 0.417762
Target:  5'- cGcCAGCacGGCGcgCUCCAGCAuGGCGCa -3'
miRNA:   3'- aC-GUUGc-CCGUuaGAGGUCGU-CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 108004 0.67 0.788387
Target:  5'- cGCcguCGGGCAGcC-CCAGCAGcggcaGCACg -3'
miRNA:   3'- aCGuu-GCCCGUUaGaGGUCGUC-----CGUG- -5'
23650 3' -56.1 NC_005261.1 + 107694 0.66 0.841609
Target:  5'- cGCGGCGGGgGcgccgccgaacGUCgcugCCgcGGCAGGCGg -3'
miRNA:   3'- aCGUUGCCCgU-----------UAGa---GG--UCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 107610 0.67 0.806816
Target:  5'- gGCAGCGGGCAcagCgUCCGugcGCGGGaACu -3'
miRNA:   3'- aCGUUGCCCGUua-G-AGGU---CGUCCgUG- -5'
23650 3' -56.1 NC_005261.1 + 107269 0.74 0.391369
Target:  5'- gGCAcggGCGGGCGcgCaUCaggCGGCAGGCACu -3'
miRNA:   3'- aCGU---UGCCCGUuaG-AG---GUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 106956 0.66 0.841609
Target:  5'- gGCc-CGGGCGcgCUCC-GCcucGGCGCg -3'
miRNA:   3'- aCGuuGCCCGUuaGAGGuCGu--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 106658 0.67 0.806816
Target:  5'- cGCucgcCGGcGCGGUCgUCCAGCGcGCGCc -3'
miRNA:   3'- aCGuu--GCC-CGUUAG-AGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 106420 0.66 0.85784
Target:  5'- cUGCAGCGGGCcgcGGUCcacgcccgcCCAGUcGGcCACg -3'
miRNA:   3'- -ACGUUGCCCG---UUAGa--------GGUCGuCC-GUG- -5'
23650 3' -56.1 NC_005261.1 + 105270 0.66 0.83319
Target:  5'- gGCucGGCGGGCGGcagCgCCGGCgagcccGGGCGCg -3'
miRNA:   3'- aCG--UUGCCCGUUa--GaGGUCG------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 105108 0.66 0.865637
Target:  5'- cGCGG-GGGCuugC-CCGcGCGGGCGCg -3'
miRNA:   3'- aCGUUgCCCGuuaGaGGU-CGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.