miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 3' -56.1 NC_005261.1 + 103786 0.69 0.668152
Target:  5'- gGCcGCGGGCcGUCUUCGGUGuGCGCc -3'
miRNA:   3'- aCGuUGCCCGuUAGAGGUCGUcCGUG- -5'
23650 3' -56.1 NC_005261.1 + 103474 0.68 0.739901
Target:  5'- cGCca-GGGCG---UCCAGCuGGCGCa -3'
miRNA:   3'- aCGuugCCCGUuagAGGUCGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 103129 0.66 0.865637
Target:  5'- cGCGccCGGGU--UCUCCAGCGccucgcGGUACc -3'
miRNA:   3'- aCGUu-GCCCGuuAGAGGUCGU------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 101691 0.66 0.839941
Target:  5'- gGCGaaGCGGGCGuggucgaagcgCUCCAGCu-GCGCc -3'
miRNA:   3'- aCGU--UGCCCGUua---------GAGGUCGucCGUG- -5'
23650 3' -56.1 NC_005261.1 + 100312 0.72 0.522927
Target:  5'- cGCGucGCGGGCGcgcucgAUCUCCAggcGCAGGUucACg -3'
miRNA:   3'- aCGU--UGCCCGU------UAGAGGU---CGUCCG--UG- -5'
23650 3' -56.1 NC_005261.1 + 99102 0.7 0.66084
Target:  5'- cGCAGCGGcuugcucGCGAUCagcgccgagagcugcUCCAGCugcgccgucAGGCACg -3'
miRNA:   3'- aCGUUGCC-------CGUUAG---------------AGGUCG---------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98985 0.67 0.79768
Target:  5'- aGC-ACGucguccucGGCAAUCUUCAGCGucgcgagcggcGGCGCg -3'
miRNA:   3'- aCGuUGC--------CCGUUAGAGGUCGU-----------CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98670 0.67 0.778946
Target:  5'- gGCGA-GGGCGggCUCCgccggGGCcggAGGCGCg -3'
miRNA:   3'- aCGUUgCCCGUuaGAGG-----UCG---UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98601 0.7 0.63675
Target:  5'- gGCGGCGcccGCAAaaUCCGGCGGGUAUg -3'
miRNA:   3'- aCGUUGCc--CGUUagAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98515 0.69 0.668152
Target:  5'- gGCGuACGGGCAggcgcgagAUCcggCCGGUAGGCuGCg -3'
miRNA:   3'- aCGU-UGCCCGU--------UAGa--GGUCGUCCG-UG- -5'
23650 3' -56.1 NC_005261.1 + 98471 0.66 0.83319
Target:  5'- -cCGACGGGCGgccGUcCUCC-GCGGGCuCg -3'
miRNA:   3'- acGUUGCCCGU---UA-GAGGuCGUCCGuG- -5'
23650 3' -56.1 NC_005261.1 + 98358 0.74 0.391369
Target:  5'- gGCGGgggUGGGCGcgggCUCUGGCGGGCGCa -3'
miRNA:   3'- aCGUU---GCCCGUua--GAGGUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98310 0.69 0.688948
Target:  5'- gGgGGCGGGCGccgCcgCCAGCGgcGGCGCg -3'
miRNA:   3'- aCgUUGCCCGUua-Ga-GGUCGU--CCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98229 0.72 0.5129
Target:  5'- cGCGGCGGGCAucgAUUUCCGcggcccgguGC-GGCGCg -3'
miRNA:   3'- aCGUUGCCCGU---UAGAGGU---------CGuCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98199 0.67 0.787449
Target:  5'- cGCGGCGGGC-------AGCGGGCGCc -3'
miRNA:   3'- aCGUUGCCCGuuagaggUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 98074 0.66 0.841609
Target:  5'- gGCGGCGGGUguguccuuggagAAUCUgggggCgCGGCGGGCGg -3'
miRNA:   3'- aCGUUGCCCG------------UUAGA-----G-GUCGUCCGUg -5'
23650 3' -56.1 NC_005261.1 + 97628 0.67 0.806816
Target:  5'- gGCGgaGCGGGCGG-----AGCGGGCGCg -3'
miRNA:   3'- aCGU--UGCCCGUUagaggUCGUCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 97063 0.71 0.563721
Target:  5'- gGCGGCGGGCAcgauccgcGUCggaggcgCCGGCugggccggGGGCGCc -3'
miRNA:   3'- aCGUUGCCCGU--------UAGa------GGUCG--------UCCGUG- -5'
23650 3' -56.1 NC_005261.1 + 96627 0.74 0.417762
Target:  5'- cGCAGCcgccGGGCGAUCUUCucGCAGGCc- -3'
miRNA:   3'- aCGUUG----CCCGUUAGAGGu-CGUCCGug -5'
23650 3' -56.1 NC_005261.1 + 93920 0.66 0.841609
Target:  5'- gGCGcccGCGGGCuugCgCCGuccGCGGGCGCc -3'
miRNA:   3'- aCGU---UGCCCGuuaGaGGU---CGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.