Results 41 - 60 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23650 | 3' | -56.1 | NC_005261.1 | + | 59794 | 0.76 | 0.311598 |
Target: 5'- gGCGGCGGGCGGcaggCCGGCGuGGCGCc -3' miRNA: 3'- aCGUUGCCCGUUaga-GGUCGU-CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 33805 | 0.77 | 0.290204 |
Target: 5'- gGCGGCGGGCuuGUCUuugggcggCCGGgGGGCGCg -3' miRNA: 3'- aCGUUGCCCGu-UAGA--------GGUCgUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 4448 | 0.77 | 0.263494 |
Target: 5'- aGCAGCGGGCc--CUCCAGC-GGCGg -3' miRNA: 3'- aCGUUGCCCGuuaGAGGUCGuCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 12304 | 0.78 | 0.238815 |
Target: 5'- cGCGggcACGGGCGcgUagCCGGCGGGCGCg -3' miRNA: 3'- aCGU---UGCCCGUuaGa-GGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 57513 | 0.79 | 0.216098 |
Target: 5'- gGCGGCGGGCcuUCuUCCA-CAGGCACg -3' miRNA: 3'- aCGUUGCCCGuuAG-AGGUcGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 19567 | 0.74 | 0.400046 |
Target: 5'- cGcCAGCGGGCGGuugauUCUCCAG-AGGUGCg -3' miRNA: 3'- aC-GUUGCCCGUU-----AGAGGUCgUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 53974 | 0.74 | 0.408844 |
Target: 5'- gGCAaaagaGCGcGGCGAgCUCCAGCGcgcGGCGCa -3' miRNA: 3'- aCGU-----UGC-CCGUUaGAGGUCGU---CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 42615 | 0.73 | 0.47364 |
Target: 5'- cGC-GCGGcGCAAagUCCAGCGGGgACu -3' miRNA: 3'- aCGuUGCC-CGUUagAGGUCGUCCgUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 76029 | 0.73 | 0.464061 |
Target: 5'- cGCcGCGGGCGccccgcgcgccAUCagcguggCCGGCGGGCGCc -3' miRNA: 3'- aCGuUGCCCGU-----------UAGa------GGUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 125339 | 0.73 | 0.464061 |
Target: 5'- cGCAGCGcGCAGggCgUCCAGCAGGCu- -3' miRNA: 3'- aCGUUGCcCGUUa-G-AGGUCGUCCGug -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 14131 | 0.73 | 0.461206 |
Target: 5'- gGCggUGGGCAGUCgcucgcgaggacgcUCCAGCcgcgaacGGCGCg -3' miRNA: 3'- aCGuuGCCCGUUAG--------------AGGUCGu------CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 54477 | 0.73 | 0.454583 |
Target: 5'- gGCAucCGGGC-GUCgggCGGCAGGCGCa -3' miRNA: 3'- aCGUu-GCCCGuUAGag-GUCGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 66509 | 0.73 | 0.454583 |
Target: 5'- aGCAGCGacauuGGCGGcgccuUCUCCAGCAGcacGCGCa -3' miRNA: 3'- aCGUUGC-----CCGUU-----AGAGGUCGUC---CGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 27469 | 0.73 | 0.445211 |
Target: 5'- cGCGggGCGGGCAGgccCUCCc-CGGGCGCa -3' miRNA: 3'- aCGU--UGCCCGUUa--GAGGucGUCCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 61520 | 0.74 | 0.426798 |
Target: 5'- gGCGAggccCGGGCcuUCUCCGGCAaGCGCc -3' miRNA: 3'- aCGUU----GCCCGuuAGAGGUCGUcCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 111408 | 0.74 | 0.426798 |
Target: 5'- aGCgGACGGGCGGgccacacgCCGGCGGGCAa -3' miRNA: 3'- aCG-UUGCCCGUUaga-----GGUCGUCCGUg -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 115177 | 0.74 | 0.417762 |
Target: 5'- cGCGAUGGGCAcgcgCUUCAGCAcGGCcCa -3' miRNA: 3'- aCGUUGCCCGUua--GAGGUCGU-CCGuG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 96627 | 0.74 | 0.417762 |
Target: 5'- cGCAGCcgccGGGCGAUCUUCucGCAGGCc- -3' miRNA: 3'- aCGUUG----CCCGUUAGAGGu-CGUCCGug -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 108212 | 0.74 | 0.417762 |
Target: 5'- cGcCAGCacGGCGcgCUCCAGCAuGGCGCa -3' miRNA: 3'- aC-GUUGc-CCGUuaGAGGUCGU-CCGUG- -5' |
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23650 | 3' | -56.1 | NC_005261.1 | + | 113901 | 0.74 | 0.408844 |
Target: 5'- cGCGGCGGGCGcgAUggCCgaggcAGCGGGCGCg -3' miRNA: 3'- aCGUUGCCCGU--UAgaGG-----UCGUCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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