miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 42913 0.66 0.399938
Target:  5'- -gGCG-CUCCgGGGCcGCCgGGCGAGu -3'
miRNA:   3'- agCGCgGGGGgCCCGcCGGgCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 30169 0.66 0.399938
Target:  5'- cCGCGCCCgCCGcGCuGCgCGcCGAGg -3'
miRNA:   3'- aGCGCGGGgGGCcCGcCGgGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 100884 0.66 0.399938
Target:  5'- gCGCaGCCCCUCGuacGCGGCCuCGccgcgcaccgccGCGAGc -3'
miRNA:   3'- aGCG-CGGGGGGCc--CGCCGG-GC------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 105091 0.66 0.399938
Target:  5'- cCGCGCCCCggaCCuuccgcggGGGCuuGCCCGcGCGGGc -3'
miRNA:   3'- aGCGCGGGG---GG--------CCCGc-CGGGC-UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 127499 0.66 0.399938
Target:  5'- -gGCuGCCUgCCGGGCguacucggcGGCCaCGAgCGAGa -3'
miRNA:   3'- agCG-CGGGgGGCCCG---------CCGG-GCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 61255 0.66 0.399938
Target:  5'- cUCGCuggccGCCUCCgGGGCcgugcccauGCCCGcCGAGa -3'
miRNA:   3'- -AGCG-----CGGGGGgCCCGc--------CGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 55438 0.66 0.392141
Target:  5'- cCGCgaGCCCUCCGaGCGGCgCGGUGGGc -3'
miRNA:   3'- aGCG--CGGGGGGCcCGCCGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 113299 0.66 0.392141
Target:  5'- cUCuCGCUgCCgCGGGCcugGGCCCGgcugcGCGAGa -3'
miRNA:   3'- -AGcGCGGgGG-GCCCG---CCGGGC-----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 133019 0.66 0.392141
Target:  5'- cUGCGCCaCCCgCGGGCGcGCCaCcGCGc- -3'
miRNA:   3'- aGCGCGG-GGG-GCCCGC-CGG-GcUGCuc -5'
23650 5' -68.2 NC_005261.1 + 8383 0.66 0.391367
Target:  5'- -aGgGCCCCCCcaagccgGGGCuGGgauucgaacccCCCGACGAc -3'
miRNA:   3'- agCgCGGGGGG-------CCCG-CC-----------GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 5602 0.66 0.389821
Target:  5'- cUCGagGCCCCCCccucuaaccccuuuGcuGCGGCgCGACGAGu -3'
miRNA:   3'- -AGCg-CGGGGGG--------------Cc-CGCCGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 121382 0.66 0.384443
Target:  5'- -gGCGCCCCgCGgcGGCGGCgCCugccCGAGu -3'
miRNA:   3'- agCGCGGGGgGC--CCGCCG-GGcu--GCUC- -5'
23650 5' -68.2 NC_005261.1 + 25150 0.66 0.384443
Target:  5'- -aGCGUCCucacuuCCCgGGGCGGCCgaGCGGGu -3'
miRNA:   3'- agCGCGGG------GGG-CCCGCCGGgcUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 106735 0.66 0.384443
Target:  5'- cUCGUGCagCCCCGGcGCcuccgcGCCCGccACGAGc -3'
miRNA:   3'- -AGCGCGg-GGGGCC-CGc-----CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 99392 0.66 0.384443
Target:  5'- cUGCaCCUCgCUGGGCGGCugCCGcACGAGc -3'
miRNA:   3'- aGCGcGGGG-GGCCCGCCG--GGC-UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 62374 0.66 0.384443
Target:  5'- cUCGCGCgCCUgCGGcaGCGGCaccguCGugGGGa -3'
miRNA:   3'- -AGCGCG-GGGgGCC--CGCCGg----GCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 131952 0.66 0.384443
Target:  5'- cCGCGCCCgucuaCCGGGUGGagcugCCGcGCGGc -3'
miRNA:   3'- aGCGCGGGg----GGCCCGCCg----GGC-UGCUc -5'
23650 5' -68.2 NC_005261.1 + 127002 0.66 0.384443
Target:  5'- -gGgGCCgaCCCCGccgcaggcGGCGGCCCGAgcaGGGa -3'
miRNA:   3'- agCgCGG--GGGGC--------CCGCCGGGCUg--CUC- -5'
23650 5' -68.2 NC_005261.1 + 67118 0.66 0.384443
Target:  5'- gCGCGCgCagUGcGGCGGCCCGACc-- -3'
miRNA:   3'- aGCGCGgGggGC-CCGCCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 104162 0.66 0.383679
Target:  5'- cCGCGCCgUCCgCGGGCGccgcgcgcgggucGUCgGGCGGGa -3'
miRNA:   3'- aGCGCGG-GGG-GCCCGC-------------CGGgCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.