miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 134871 0.66 0.364903
Target:  5'- cCGCGCCCCCgCGGGCcccugcugugcguucGG-UgGugGAGc -3'
miRNA:   3'- aGCGCGGGGG-GCCCG---------------CCgGgCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 49144 0.66 0.369351
Target:  5'- cCGCGCgCagguauuugUCCGcaaaGGCGGCCaCGGCGGGg -3'
miRNA:   3'- aGCGCGgG---------GGGC----CCGCCGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 32003 0.66 0.359761
Target:  5'- cCGUGCCgCCgcgcgaguaCCGGcagcgcgugcugccGCGGCUCGACGGGc -3'
miRNA:   3'- aGCGCGG-GG---------GGCC--------------CGCCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 29287 0.66 0.361958
Target:  5'- cUGaCGCCCUCCGgcgaGGCcuGGCCCGGCa-- -3'
miRNA:   3'- aGC-GCGGGGGGC----CCG--CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 4960 0.66 0.368607
Target:  5'- -gGCGCCCCcggCCGcGGCguccucuggGGCCCGGagggcgcCGAGg -3'
miRNA:   3'- agCGCGGGG---GGC-CCG---------CCGGGCU-------GCUC- -5'
23650 5' -68.2 NC_005261.1 + 32327 0.66 0.361958
Target:  5'- cCGCGgCgCCCGGcGUGGCCUggGACGcGGa -3'
miRNA:   3'- aGCGCgGgGGGCC-CGCCGGG--CUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 100827 0.66 0.369351
Target:  5'- cUGCGCCgCCCaGGCcgggaGCUCGGCGAc -3'
miRNA:   3'- aGCGCGGgGGGcCCGc----CGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 53542 0.66 0.368607
Target:  5'- gUUGCGCUCUUCGGccgcgccGCGGCCCaGGCGc- -3'
miRNA:   3'- -AGCGCGGGGGGCC-------CGCCGGG-CUGCuc -5'
23650 5' -68.2 NC_005261.1 + 112056 0.66 0.369351
Target:  5'- -aGcCGgCCUUCGGGCGuGCCCucgucGGCGAGg -3'
miRNA:   3'- agC-GCgGGGGGCCCGC-CGGG-----CUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 8825 0.66 0.369351
Target:  5'- -gGCGCCCgCCGGGCaagggGGCggggacaggCCGugGGa -3'
miRNA:   3'- agCGCGGGgGGCCCG-----CCG---------GGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 71778 0.66 0.369351
Target:  5'- cCGCgGCCCgCUCGcagcugagcgcGGCccGGCCCGugGGGa -3'
miRNA:   3'- aGCG-CGGG-GGGC-----------CCG--CCGGGCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 17554 0.66 0.369351
Target:  5'- gCGgGCCCgCCGuucggcGGUGGCCUugcgGGCGAGc -3'
miRNA:   3'- aGCgCGGGgGGC------CCGCCGGG----CUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 39173 0.66 0.369351
Target:  5'- aCGCGCUCgggCCCGacucGCGcCCCGGCGAGc -3'
miRNA:   3'- aGCGCGGG---GGGCc---CGCcGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 23490 0.66 0.361225
Target:  5'- gCGgGCCCgCCUGGGCaggcgcgGGCCCuGgGAGc -3'
miRNA:   3'- aGCgCGGG-GGGCCCG-------CCGGGcUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 127499 0.66 0.399938
Target:  5'- -gGCuGCCUgCCGGGCguacucggcGGCCaCGAgCGAGa -3'
miRNA:   3'- agCG-CGGGgGGCCCG---------CCGG-GCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 92565 0.66 0.361958
Target:  5'- gCGCGCCCCgCGcgccGCGcGCCCacgcGCGAGc -3'
miRNA:   3'- aGCGCGGGGgGCc---CGC-CGGGc---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12345 0.66 0.369351
Target:  5'- gCGCgGCCgCCgCCGcGGCGGCaaCCGGCGc- -3'
miRNA:   3'- aGCG-CGG-GG-GGC-CCGCCG--GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 102545 0.66 0.361958
Target:  5'- cUGCGgCCCCa-GGC-GCCCGGCGGa -3'
miRNA:   3'- aGCGCgGGGGgcCCGcCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 111776 0.66 0.369351
Target:  5'- cUGCGCgCCCgGGGUGuGCCCcugGACGc- -3'
miRNA:   3'- aGCGCGgGGGgCCCGC-CGGG---CUGCuc -5'
23650 5' -68.2 NC_005261.1 + 75828 0.66 0.361958
Target:  5'- gCGCgGCCgCgCCCGGggaggggcgcGCGGCgCCGACGGc -3'
miRNA:   3'- aGCG-CGG-G-GGGCC----------CGCCG-GGCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.