miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 134871 0.66 0.364903
Target:  5'- cCGCGCCCCCgCGGGCcccugcugugcguucGG-UgGugGAGc -3'
miRNA:   3'- aGCGCGGGGG-GCCCG---------------CCgGgCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 8825 0.66 0.369351
Target:  5'- -gGCGCCCgCCGGGCaagggGGCggggacaggCCGugGGa -3'
miRNA:   3'- agCGCGGGgGGCCCG-----CCG---------GGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 135641 0.66 0.361225
Target:  5'- aUGCGCUgCUaccugcgcgggcgCGGGCGGCCCucgcuCGAGg -3'
miRNA:   3'- aGCGCGGgGG-------------GCCCGCCGGGcu---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 106735 0.66 0.384443
Target:  5'- cUCGUGCagCCCCGGcGCcuccgcGCCCGccACGAGc -3'
miRNA:   3'- -AGCGCGg-GGGGCC-CGc-----CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 135436 0.66 0.376846
Target:  5'- cUCGCacGCCgCCCaGGCGGCgCGggcgcuGCGGGa -3'
miRNA:   3'- -AGCG--CGGgGGGcCCGCCGgGC------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4960 0.66 0.368607
Target:  5'- -gGCGCCCCcggCCGcGGCguccucuggGGCCCGGagggcgcCGAGg -3'
miRNA:   3'- agCGCGGGG---GGC-CCG---------CCGGGCU-------GCUC- -5'
23650 5' -68.2 NC_005261.1 + 12345 0.66 0.369351
Target:  5'- gCGCgGCCgCCgCCGcGGCGGCaaCCGGCGc- -3'
miRNA:   3'- aGCG-CGG-GG-GGC-CCGCCG--GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 100827 0.66 0.369351
Target:  5'- cUGCGCCgCCCaGGCcgggaGCUCGGCGAc -3'
miRNA:   3'- aGCGCGGgGGGcCCGc----CGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 58542 0.66 0.374587
Target:  5'- -aGcCGCCgCCCGGGCuccugcgccgucguGGCCgcgagCGGCGAGc -3'
miRNA:   3'- agC-GCGGgGGGCCCG--------------CCGG-----GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 62374 0.66 0.384443
Target:  5'- cUCGCGCgCCUgCGGcaGCGGCaccguCGugGGGa -3'
miRNA:   3'- -AGCGCG-GGGgGCC--CGCCGg----GCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 32327 0.66 0.361958
Target:  5'- cCGCGgCgCCCGGcGUGGCCUggGACGcGGa -3'
miRNA:   3'- aGCGCgGgGGGCC-CGCCGGG--CUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 127002 0.66 0.384443
Target:  5'- -gGgGCCgaCCCCGccgcaggcGGCGGCCCGAgcaGGGa -3'
miRNA:   3'- agCgCGG--GGGGC--------CCGCCGGGCUg--CUC- -5'
23650 5' -68.2 NC_005261.1 + 101920 0.66 0.382154
Target:  5'- cCGCGUgCCCCcGGCGGUagaacgccacguacUUGGCGAGc -3'
miRNA:   3'- aGCGCGgGGGGcCCGCCG--------------GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 102545 0.66 0.361958
Target:  5'- cUGCGgCCCCa-GGC-GCCCGGCGGa -3'
miRNA:   3'- aGCGCgGGGGgcCCGcCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 71778 0.66 0.369351
Target:  5'- cCGCgGCCCgCUCGcagcugagcgcGGCccGGCCCGugGGGa -3'
miRNA:   3'- aGCG-CGGG-GGGC-----------CCG--CCGGGCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 107883 0.66 0.376092
Target:  5'- cUCGCGCCCgcggcccgcuuguCCgCGGccGCGGCCuCGgccACGAGu -3'
miRNA:   3'- -AGCGCGGG-------------GG-GCC--CGCCGG-GC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 75828 0.66 0.361958
Target:  5'- gCGCgGCCgCgCCCGGggaggggcgcGCGGCgCCGACGGc -3'
miRNA:   3'- aGCG-CGG-G-GGGCC----------CGCCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 131952 0.66 0.384443
Target:  5'- cCGCGCCCgucuaCCGGGUGGagcugCCGcGCGGc -3'
miRNA:   3'- aGCGCGGGg----GGCCCGCCg----GGC-UGCUc -5'
23650 5' -68.2 NC_005261.1 + 66016 0.66 0.376092
Target:  5'- gCGCGCCaCCgCCGgcgcgucguagucGGCGGCCaCGGCcAGc -3'
miRNA:   3'- aGCGCGG-GG-GGC-------------CCGCCGG-GCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 53542 0.66 0.368607
Target:  5'- gUUGCGCUCUUCGGccgcgccGCGGCCCaGGCGc- -3'
miRNA:   3'- -AGCGCGGGGGGCC-------CGCCGGG-CUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.