miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 71778 0.66 0.369351
Target:  5'- cCGCgGCCCgCUCGcagcugagcgcGGCccGGCCCGugGGGa -3'
miRNA:   3'- aGCG-CGGG-GGGC-----------CCG--CCGGGCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 67118 0.66 0.384443
Target:  5'- gCGCGCgCagUGcGGCGGCCCGACc-- -3'
miRNA:   3'- aGCGCGgGggGC-CCGCCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 127002 0.66 0.384443
Target:  5'- -gGgGCCgaCCCCGccgcaggcGGCGGCCCGAgcaGGGa -3'
miRNA:   3'- agCgCGG--GGGGC--------CCGCCGGGCUg--CUC- -5'
23650 5' -68.2 NC_005261.1 + 32327 0.66 0.361958
Target:  5'- cCGCGgCgCCCGGcGUGGCCUggGACGcGGa -3'
miRNA:   3'- aGCGCgGgGGGCC-CGCCGGG--CUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 107883 0.66 0.376092
Target:  5'- cUCGCGCCCgcggcccgcuuguCCgCGGccGCGGCCuCGgccACGAGu -3'
miRNA:   3'- -AGCGCGGG-------------GG-GCC--CGCCGG-GC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 23490 0.66 0.361225
Target:  5'- gCGgGCCCgCCUGGGCaggcgcgGGCCCuGgGAGc -3'
miRNA:   3'- aGCgCGGG-GGGCCCG-------CCGGGcUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 53542 0.66 0.368607
Target:  5'- gUUGCGCUCUUCGGccgcgccGCGGCCCaGGCGc- -3'
miRNA:   3'- -AGCGCGGGGGGCC-------CGCCGGG-CUGCuc -5'
23650 5' -68.2 NC_005261.1 + 100827 0.66 0.369351
Target:  5'- cUGCGCCgCCCaGGCcgggaGCUCGGCGAc -3'
miRNA:   3'- aGCGCGGgGGGcCCGc----CGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 62374 0.66 0.384443
Target:  5'- cUCGCGCgCCUgCGGcaGCGGCaccguCGugGGGa -3'
miRNA:   3'- -AGCGCG-GGGgGCC--CGCCGg----GCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 15262 0.67 0.326559
Target:  5'- cCGCGaUCgCCCC-GGCGGCgCCGcCGGGg -3'
miRNA:   3'- aGCGC-GG-GGGGcCCGCCG-GGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 106654 0.67 0.324519
Target:  5'- gUCGCGCUCgCCGGcGCGgucguccagcgcgcGCCCGAgGGc -3'
miRNA:   3'- -AGCGCGGGgGGCC-CGC--------------CGGGCUgCUc -5'
23650 5' -68.2 NC_005261.1 + 35077 0.67 0.332738
Target:  5'- cCGCGCCCCCucgcccuCGGagccGCGGUgagCGGCGAGc -3'
miRNA:   3'- aGCGCGGGGG-------GCC----CGCCGg--GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 22491 0.67 0.333429
Target:  5'- -aGCGCgCCCgCGGGgGGCCacgCGGCGu- -3'
miRNA:   3'- agCGCGgGGG-GCCCgCCGG---GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 29852 0.67 0.326559
Target:  5'- cCGUGCUCgCCGGccgcGCGGCgCCGGCGc- -3'
miRNA:   3'- aGCGCGGGgGGCC----CGCCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 4854 0.67 0.319795
Target:  5'- cCGCaGCCUCaaGGGCGGCggccaCGACGGc -3'
miRNA:   3'- aGCG-CGGGGggCCCGCCGg----GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 77523 0.67 0.319795
Target:  5'- cCGCGCCCCcgcccccgaugCCGGGCuGGUaCGGCGc- -3'
miRNA:   3'- aGCGCGGGG-----------GGCCCG-CCGgGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 134134 0.67 0.319795
Target:  5'- cUCGa-CCCCCUGGGCuGcGCCUGGCGc- -3'
miRNA:   3'- -AGCgcGGGGGGCCCG-C-CGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 3821 0.67 0.319795
Target:  5'- gCGCGCUgCCgCGGGCccgGGCgCUGGCGGc -3'
miRNA:   3'- aGCGCGGgGG-GCCCG---CCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 76450 0.67 0.326559
Target:  5'- aCGCGCCCgaCGgcgacGGCGGCgCCGGCGc- -3'
miRNA:   3'- aGCGCGGGggGC-----CCGCCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 77736 0.67 0.324519
Target:  5'- -gGCGCCgguacaacugggagCCCCuacgcagccgGGGCGGCggggaCGACGAGg -3'
miRNA:   3'- agCGCGG--------------GGGG----------CCCGCCGg----GCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.