Results 61 - 80 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23650 | 5' | -68.2 | NC_005261.1 | + | 4377 | 0.67 | 0.346772 |
Target: 5'- cCGCGCCgCCgaagcgcacgcggCCGGGCGGCggCGGCGc- -3' miRNA: 3'- aGCGCGG-GG-------------GGCCCGCCGg-GCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 35077 | 0.67 | 0.332738 |
Target: 5'- cCGCGCCCCCucgcccuCGGagccGCGGUgagCGGCGAGc -3' miRNA: 3'- aGCGCGGGGG-------GCC----CGCCGg--GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 75394 | 0.67 | 0.340404 |
Target: 5'- gCGCGCCaucgaCgaGGGCgcGGCCCGGCGc- -3' miRNA: 3'- aGCGCGGg----GggCCCG--CCGGGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 113128 | 0.67 | 0.313136 |
Target: 5'- cUCuCGCCCgCCgCGcGGCGGCUgaaCGugGAGa -3' miRNA: 3'- -AGcGCGGG-GG-GC-CCGCCGG---GCugCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 94997 | 0.67 | 0.339702 |
Target: 5'- gCGCGCCCCgCCcugcgGGGCGGgCuauaaagccgccgCCGGCGGc -3' miRNA: 3'- aGCGCGGGG-GG-----CCCGCC-G-------------GGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 129768 | 0.67 | 0.333429 |
Target: 5'- -gGCGaCCgCCGGGCucGGCCCGGCc-- -3' miRNA: 3'- agCGCgGGgGGCCCG--CCGGGCUGcuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 48321 | 0.67 | 0.333429 |
Target: 5'- gUCGgGCCCgggCUCggGGGCGcGCgCGGCGAGg -3' miRNA: 3'- -AGCgCGGG---GGG--CCCGC-CGgGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23689 | 0.67 | 0.333429 |
Target: 5'- -aGCGCCCCCgacgCGaGGCccGCCCGGuCGGGu -3' miRNA: 3'- agCGCGGGGG----GC-CCGc-CGGGCU-GCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 76450 | 0.67 | 0.326559 |
Target: 5'- aCGCGCCCgaCGgcgacGGCGGCgCCGGCGc- -3' miRNA: 3'- aGCGCGGGggGC-----CCGCCG-GGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 134715 | 0.67 | 0.340404 |
Target: 5'- gCGCGCCCagacccggCCGGGaccCGGaCUCGGCGAc -3' miRNA: 3'- aGCGCGGGg-------GGCCC---GCC-GGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 60934 | 0.67 | 0.347485 |
Target: 5'- -gGCGaCCCgCGGGCcguGGCCCGAgCGGc -3' miRNA: 3'- agCGCgGGGgGCCCG---CCGGGCU-GCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 20429 | 0.67 | 0.353946 |
Target: 5'- -gGCGCCuUCCCGGGgGggagcgcagacguGCCCGcGCGGGu -3' miRNA: 3'- agCGCGG-GGGGCCCgC-------------CGGGC-UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 77577 | 0.67 | 0.347485 |
Target: 5'- cCGCGCCCuggcacCCCGGGUacGGCuucccgCCGcCGGGg -3' miRNA: 3'- aGCGCGGG------GGGCCCG--CCG------GGCuGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 39231 | 0.67 | 0.340404 |
Target: 5'- cUCGCGCgCgCCGGcGaGGUcuCCGGCGAGg -3' miRNA: 3'- -AGCGCGgGgGGCC-CgCCG--GGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 92760 | 0.67 | 0.326559 |
Target: 5'- cCGCGCCgCUcggaCCGGGcCGaGCCCGGgcuCGGGg -3' miRNA: 3'- aGCGCGG-GG----GGCCC-GC-CGGGCU---GCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 2413 | 0.67 | 0.347485 |
Target: 5'- gCGgGCCCCgCGcGGCGGCgggCCG-CGAu -3' miRNA: 3'- aGCgCGGGGgGC-CCGCCG---GGCuGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 33268 | 0.67 | 0.347485 |
Target: 5'- gUCGCGgCCCCCGuccccguccCGGUCCGugGGc -3' miRNA: 3'- -AGCGCgGGGGGCcc-------GCCGGGCugCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 22491 | 0.67 | 0.333429 |
Target: 5'- -aGCGCgCCCgCGGGgGGCCacgCGGCGu- -3' miRNA: 3'- agCGCGgGGG-GCCCgCCGG---GCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 118084 | 0.67 | 0.347485 |
Target: 5'- cCGCGCUCgUCUGcuGGCGGCCCGccGCGcAGa -3' miRNA: 3'- aGCGCGGG-GGGC--CCGCCGGGC--UGC-UC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 40256 | 0.67 | 0.333429 |
Target: 5'- -aGCGCCa-UgGcGGCGGCCgCGGCGGGg -3' miRNA: 3'- agCGCGGggGgC-CCGCCGG-GCUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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