Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23650 | 5' | -68.2 | NC_005261.1 | + | 115856 | 0.73 | 0.129233 |
Target: 5'- gCGCGgCCCCCGccgaGGCGcGCCCGGCa-- -3' miRNA: 3'- aGCGCgGGGGGC----CCGC-CGGGCUGcuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 117503 | 0.73 | 0.132353 |
Target: 5'- cUUGCGCCCgCCGGcGCcGCCaCGAUGAGc -3' miRNA: 3'- -AGCGCGGGgGGCC-CGcCGG-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 34731 | 0.73 | 0.138801 |
Target: 5'- -gGCGCCCCCU-GGCGGCC--GCGGGg -3' miRNA: 3'- agCGCGGGGGGcCCGCCGGgcUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 59717 | 0.73 | 0.138801 |
Target: 5'- aCcCGCCCgCCGGGCGGCagCGGCGGc -3' miRNA: 3'- aGcGCGGGgGGCCCGCCGg-GCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 51416 | 0.73 | 0.141125 |
Target: 5'- gCGCGCCcaccgccugcugggCCCCGGGCGcGCCgUGAUGAu -3' miRNA: 3'- aGCGCGG--------------GGGGCCCGC-CGG-GCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 55269 | 0.73 | 0.142132 |
Target: 5'- cUGCGCCCCCUGGcGCG-CCggaGGCGGGg -3' miRNA: 3'- aGCGCGGGGGGCC-CGCcGGg--CUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23817 | 0.73 | 0.129233 |
Target: 5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3' miRNA: 3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23760 | 0.73 | 0.129233 |
Target: 5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3' miRNA: 3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 43820 | 0.73 | 0.123197 |
Target: 5'- gCGCGCCCUCCGuGGagaagcuGCUCGGCGAGg -3' miRNA: 3'- aGCGCGGGGGGC-CCgc-----CGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 130546 | 0.73 | 0.123197 |
Target: 5'- gUCGCGUuuuauCUgCUGGGCGGCCCGcCGGGc -3' miRNA: 3'- -AGCGCG-----GGgGGCCCGCCGGGCuGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 90067 | 0.73 | 0.123197 |
Target: 5'- -gGCGCCCCgCGGGCgccgagGGCagCGACGGGg -3' miRNA: 3'- agCGCGGGGgGCCCG------CCGg-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 125676 | 0.73 | 0.123197 |
Target: 5'- aCGUGCCgCCgaauggguuugCCGGGCuuGGCCCGGCGAc -3' miRNA: 3'- aGCGCGG-GG-----------GGCCCG--CCGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 88154 | 0.73 | 0.124383 |
Target: 5'- -gGCGCCCCggccgcgcagCCGGGCcggggcgacgccggcGGCgCCGGCGAGg -3' miRNA: 3'- agCGCGGGG----------GGCCCG---------------CCG-GGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 46492 | 0.73 | 0.126182 |
Target: 5'- -gGCGCCCUCCgcgGGGCGcaGCCCGGCGu- -3' miRNA: 3'- agCGCGGGGGG---CCCGC--CGGGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 132587 | 0.73 | 0.126182 |
Target: 5'- -gGCGCgCCCgCGGacgccCGGCCCGGCGAGc -3' miRNA: 3'- agCGCGgGGG-GCCc----GCCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 72964 | 0.72 | 0.152568 |
Target: 5'- cUCGCGCCCgCCGccgcGGgGGUCCG-CGAGc -3' miRNA: 3'- -AGCGCGGGgGGC----CCgCCGGGCuGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 2564 | 0.72 | 0.145536 |
Target: 5'- gCGCGggcgugugguaCUCCCCGGGCGGCaCgCGGCGGa -3' miRNA: 3'- aGCGC-----------GGGGGGCCCGCCG-G-GCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 74101 | 0.72 | 0.149014 |
Target: 5'- cUCGC-CCCCCCGGGCccGGaCCCGGUGGu -3' miRNA: 3'- -AGCGcGGGGGGCCCG--CC-GGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 60393 | 0.72 | 0.152209 |
Target: 5'- gUGCGCCUCCauggcgcCGGGcCGGCCCGGgccCGGGg -3' miRNA: 3'- aGCGCGGGGG-------GCCC-GCCGGGCU---GCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 94864 | 0.72 | 0.152568 |
Target: 5'- cUCGCGCacggCCCgggCGGGCGGCCCG-CGuGc -3' miRNA: 3'- -AGCGCGg---GGG---GCCCGCCGGGCuGCuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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