miRNA display CGI


Results 41 - 60 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 72964 0.72 0.152568
Target:  5'- cUCGCGCCCgCCGccgcGGgGGUCCG-CGAGc -3'
miRNA:   3'- -AGCGCGGGgGGC----CCgCCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 94864 0.72 0.152568
Target:  5'- cUCGCGCacggCCCgggCGGGCGGCCCG-CGuGc -3'
miRNA:   3'- -AGCGCGg---GGG---GCCCGCCGGGCuGCuC- -5'
23650 5' -68.2 NC_005261.1 + 60393 0.72 0.152209
Target:  5'- gUGCGCCUCCauggcgcCGGGcCGGCCCGGgccCGGGg -3'
miRNA:   3'- aGCGCGGGGG-------GCCC-GCCGGGCU---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 74101 0.72 0.149014
Target:  5'- cUCGC-CCCCCCGGGCccGGaCCCGGUGGu -3'
miRNA:   3'- -AGCGcGGGGGGCCCG--CC-GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 2564 0.72 0.145536
Target:  5'- gCGCGggcgugugguaCUCCCCGGGCGGCaCgCGGCGGa -3'
miRNA:   3'- aGCGC-----------GGGGGGCCCGCCG-G-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 117666 0.72 0.145536
Target:  5'- -aGCGCCCCgCCGcgcccGGCcgGGCCCGcgGCGAGg -3'
miRNA:   3'- agCGCGGGG-GGC-----CCG--CCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 59991 0.71 0.188155
Target:  5'- gUC-CGCaCCCUCGGGCaGCgCGACGGGc -3'
miRNA:   3'- -AGcGCG-GGGGGCCCGcCGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 93947 0.71 0.188155
Target:  5'- -gGCGCCgCCuCCGGGCGGUcggCCGuCGAc -3'
miRNA:   3'- agCGCGG-GG-GGCCCGCCG---GGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 131454 0.71 0.188155
Target:  5'- cCGCGCCUCgCGGGCGccuCCCGccuccGCGAGc -3'
miRNA:   3'- aGCGCGGGGgGCCCGCc--GGGC-----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 38296 0.71 0.188155
Target:  5'- gUGCugGCCCgCCUgagcgcgcaGGGCGGCCCGAUGGu -3'
miRNA:   3'- aGCG--CGGG-GGG---------CCCGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 93827 0.71 0.192532
Target:  5'- cCGcCGCagCCgCCGGGCGGCgCCGcCGAGc -3'
miRNA:   3'- aGC-GCGg-GG-GGCCCGCCG-GGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12503 0.71 0.192532
Target:  5'- aUG-GCCCCCCGGGCGaCCgCG-CGGGg -3'
miRNA:   3'- aGCgCGGGGGGCCCGCcGG-GCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4548 0.71 0.185571
Target:  5'- cCGgGCCCuggccuuggcuggauCCgCGGGCgGGUCCGGCGGGg -3'
miRNA:   3'- aGCgCGGG---------------GG-GCCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 70813 0.71 0.183866
Target:  5'- cCGCGCCggcggCCCCGGGCG-CgCCGGCGc- -3'
miRNA:   3'- aGCGCGG-----GGGGCCCGCcG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 125532 0.71 0.179663
Target:  5'- cUCGCGCCgCCCgcaGGGCGGCgCCa--GAGg -3'
miRNA:   3'- -AGCGCGG-GGGg--CCCGCCG-GGcugCUC- -5'
23650 5' -68.2 NC_005261.1 + 6256 0.71 0.179663
Target:  5'- gCcCGCCCCgCgGGGCGGCCCGcCGc- -3'
miRNA:   3'- aGcGCGGGG-GgCCCGCCGGGCuGCuc -5'
23650 5' -68.2 NC_005261.1 + 33838 0.71 0.179663
Target:  5'- gCGgGCCCCCUggcgcuGGGCGGgCCGG-GAGg -3'
miRNA:   3'- aGCgCGGGGGG------CCCGCCgGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 88575 0.71 0.175546
Target:  5'- aCGCGUCCCgcuucgccgCCGaGGCccGGCCCGGCGGc -3'
miRNA:   3'- aGCGCGGGG---------GGC-CCG--CCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 5997 0.71 0.175546
Target:  5'- cCGCuCCUCCCGcGGCgagGGCuCCGGCGAGc -3'
miRNA:   3'- aGCGcGGGGGGC-CCG---CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 63450 0.71 0.192532
Target:  5'- cCGCGCCCgCCGaGC-GCCCG-CGAGg -3'
miRNA:   3'- aGCGCGGGgGGCcCGcCGGGCuGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.