Results 1 - 20 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23650 | 5' | -68.2 | NC_005261.1 | + | 48759 | 1.07 | 0.000393 |
Target: 5'- gUCGCGCCCCCCGGGCGGCCCGACGAGc -3' miRNA: 3'- -AGCGCGGGGGGCCCGCCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 12735 | 0.89 | 0.008675 |
Target: 5'- cCGCcgGCCCCCUGGGCgGGCCCGGCGAGg -3' miRNA: 3'- aGCG--CGGGGGGCCCG-CCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 110173 | 0.85 | 0.01814 |
Target: 5'- cCGCGCCCCCCGGGCGGCaguuccgCGACGu- -3' miRNA: 3'- aGCGCGGGGGGCCCGCCGg------GCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 72717 | 0.79 | 0.047282 |
Target: 5'- gUCGCGCCCgCCgccccguccgcgCGGGCGGCCCGcaugGCGGGc -3' miRNA: 3'- -AGCGCGGG-GG------------GCCCGCCGGGC----UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 131650 | 0.77 | 0.063736 |
Target: 5'- aCGgGCCCCCCGGGCG-CaCCGucuGCGAGg -3' miRNA: 3'- aGCgCGGGGGGCCCGCcG-GGC---UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 107669 | 0.77 | 0.072119 |
Target: 5'- cCGCgGCCCCgCCGGGCGuugccGCCgCGGCGGGg -3' miRNA: 3'- aGCG-CGGGG-GGCCCGC-----CGG-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 11900 | 0.76 | 0.073919 |
Target: 5'- gCGCGCCCgCCgCGGGCccGGCCCGGCcGGc -3' miRNA: 3'- aGCGCGGG-GG-GCCCG--CCGGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 13059 | 0.76 | 0.077648 |
Target: 5'- gCGCGCCCCugCCGGGCgcguccgccGGCCCGucgGCGGGc -3' miRNA: 3'- aGCGCGGGG--GGCCCG---------CCGGGC---UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 4517 | 0.76 | 0.079579 |
Target: 5'- gCGCGCCCgCgCGGGC-GCCgCGGCGAGg -3' miRNA: 3'- aGCGCGGGgG-GCCCGcCGG-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 138014 | 0.76 | 0.085653 |
Target: 5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3' miRNA: 3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 343 | 0.76 | 0.085653 |
Target: 5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3' miRNA: 3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 76858 | 0.75 | 0.089945 |
Target: 5'- cUCGCGCCgCCU-GGC-GCCCGGCGAGg -3' miRNA: 3'- -AGCGCGGgGGGcCCGcCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 63015 | 0.75 | 0.092166 |
Target: 5'- cCGCGCCCgCgCGGGCGccggcGCCCGcgGCGAGg -3' miRNA: 3'- aGCGCGGGgG-GCCCGC-----CGGGC--UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 95378 | 0.74 | 0.106627 |
Target: 5'- cUCGCgGCCCCCCGGcgcgccgcucGCGGCCaucaCGGCGGa -3' miRNA: 3'- -AGCG-CGGGGGGCC----------CGCCGG----GCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 96200 | 0.74 | 0.106627 |
Target: 5'- aCGCGCa--CUGGGCGcGCCCGACGAu -3' miRNA: 3'- aGCGCGgggGGCCCGC-CGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 15297 | 0.74 | 0.109235 |
Target: 5'- gUCGCGgCCUCCGGGUcgucggagccgGGCCCGuCGAa -3' miRNA: 3'- -AGCGCgGGGGGCCCG-----------CCGGGCuGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 73469 | 0.74 | 0.111904 |
Target: 5'- gCGCGCCCCCCcuGGGCcgcGGCgCGGCGc- -3' miRNA: 3'- aGCGCGGGGGG--CCCG---CCGgGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 83067 | 0.74 | 0.114633 |
Target: 5'- cUGCGCgCCCCCGcGGCGGC-CGGCGc- -3' miRNA: 3'- aGCGCG-GGGGGC-CCGCCGgGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 94048 | 0.74 | 0.120278 |
Target: 5'- gCGCGCCCCCCcaGCGGCgCCGG-GAGc -3' miRNA: 3'- aGCGCGGGGGGccCGCCG-GGCUgCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 130546 | 0.73 | 0.123197 |
Target: 5'- gUCGCGUuuuauCUgCUGGGCGGCCCGcCGGGc -3' miRNA: 3'- -AGCGCG-----GGgGGCCCGCCGGGCuGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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