miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 90067 0.73 0.123197
Target:  5'- -gGCGCCCCgCGGGCgccgagGGCagCGACGGGg -3'
miRNA:   3'- agCGCGGGGgGCCCG------CCGg-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 130546 0.73 0.123197
Target:  5'- gUCGCGUuuuauCUgCUGGGCGGCCCGcCGGGc -3'
miRNA:   3'- -AGCGCG-----GGgGGCCCGCCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 43820 0.73 0.123197
Target:  5'- gCGCGCCCUCCGuGGagaagcuGCUCGGCGAGg -3'
miRNA:   3'- aGCGCGGGGGGC-CCgc-----CGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 88154 0.73 0.124383
Target:  5'- -gGCGCCCCggccgcgcagCCGGGCcggggcgacgccggcGGCgCCGGCGAGg -3'
miRNA:   3'- agCGCGGGG----------GGCCCG---------------CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 46492 0.73 0.126182
Target:  5'- -gGCGCCCUCCgcgGGGCGcaGCCCGGCGu- -3'
miRNA:   3'- agCGCGGGGGG---CCCGC--CGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 132587 0.73 0.126182
Target:  5'- -gGCGCgCCCgCGGacgccCGGCCCGGCGAGc -3'
miRNA:   3'- agCGCGgGGG-GCCc----GCCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 115856 0.73 0.129233
Target:  5'- gCGCGgCCCCCGccgaGGCGcGCCCGGCa-- -3'
miRNA:   3'- aGCGCgGGGGGC----CCGC-CGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 23874 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 23817 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 23760 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 117503 0.73 0.132353
Target:  5'- cUUGCGCCCgCCGGcGCcGCCaCGAUGAGc -3'
miRNA:   3'- -AGCGCGGGgGGCC-CGcCGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 59717 0.73 0.138801
Target:  5'- aCcCGCCCgCCGGGCGGCagCGGCGGc -3'
miRNA:   3'- aGcGCGGGgGGCCCGCCGg-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 34731 0.73 0.138801
Target:  5'- -gGCGCCCCCU-GGCGGCC--GCGGGg -3'
miRNA:   3'- agCGCGGGGGGcCCGCCGGgcUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 51416 0.73 0.141125
Target:  5'- gCGCGCCcaccgccugcugggCCCCGGGCGcGCCgUGAUGAu -3'
miRNA:   3'- aGCGCGG--------------GGGGCCCGC-CGG-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 55269 0.73 0.142132
Target:  5'- cUGCGCCCCCUGGcGCG-CCggaGGCGGGg -3'
miRNA:   3'- aGCGCGGGGGGCC-CGCcGGg--CUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 117666 0.72 0.145536
Target:  5'- -aGCGCCCCgCCGcgcccGGCcgGGCCCGcgGCGAGg -3'
miRNA:   3'- agCGCGGGG-GGC-----CCG--CCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 2564 0.72 0.145536
Target:  5'- gCGCGggcgugugguaCUCCCCGGGCGGCaCgCGGCGGa -3'
miRNA:   3'- aGCGC-----------GGGGGGCCCGCCG-G-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 74101 0.72 0.149014
Target:  5'- cUCGC-CCCCCCGGGCccGGaCCCGGUGGu -3'
miRNA:   3'- -AGCGcGGGGGGCCCG--CC-GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 60393 0.72 0.152209
Target:  5'- gUGCGCCUCCauggcgcCGGGcCGGCCCGGgccCGGGg -3'
miRNA:   3'- aGCGCGGGGG-------GCCC-GCCGGGCU---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 72964 0.72 0.152568
Target:  5'- cUCGCGCCCgCCGccgcGGgGGUCCG-CGAGc -3'
miRNA:   3'- -AGCGCGGGgGGC----CCgCCGGGCuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.