miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 72964 0.72 0.152568
Target:  5'- cUCGCGCCCgCCGccgcGGgGGUCCG-CGAGc -3'
miRNA:   3'- -AGCGCGGGgGGC----CCgCCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 104505 0.72 0.152568
Target:  5'- gUGCaGCCgCUCCGuGGCGGCCgCGACGGc -3'
miRNA:   3'- aGCG-CGG-GGGGC-CCGCCGG-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 121619 0.72 0.152568
Target:  5'- cCGcCGCCUCCCGccgcucGGCGGCcgccgCCGGCGAGc -3'
miRNA:   3'- aGC-GCGGGGGGC------CCGCCG-----GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 60229 0.72 0.159907
Target:  5'- -gGCGCCCCCaGGGCcgccuccGCCgCGGCGGGa -3'
miRNA:   3'- agCGCGGGGGgCCCGc------CGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 57623 0.72 0.163695
Target:  5'- gCGCaGCCCUCCGGGUGGCUCaGCa-- -3'
miRNA:   3'- aGCG-CGGGGGGCCCGCCGGGcUGcuc -5'
23650 5' -68.2 NC_005261.1 + 91149 0.72 0.163695
Target:  5'- cCGUGCCgCCCGGcgaGUGGCCCgGGCGGc -3'
miRNA:   3'- aGCGCGGgGGGCC---CGCCGGG-CUGCUc -5'
23650 5' -68.2 NC_005261.1 + 45676 0.71 0.171513
Target:  5'- aCGCGCgCCCCGGGCuGCUgaACGGGc -3'
miRNA:   3'- aGCGCGgGGGGCCCGcCGGgcUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5997 0.71 0.175546
Target:  5'- cCGCuCCUCCCGcGGCgagGGCuCCGGCGAGc -3'
miRNA:   3'- aGCGcGGGGGGC-CCG---CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 88575 0.71 0.175546
Target:  5'- aCGCGUCCCgcuucgccgCCGaGGCccGGCCCGGCGGc -3'
miRNA:   3'- aGCGCGGGG---------GGC-CCG--CCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 33838 0.71 0.179663
Target:  5'- gCGgGCCCCCUggcgcuGGGCGGgCCGG-GAGg -3'
miRNA:   3'- aGCgCGGGGGG------CCCGCCgGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 6256 0.71 0.179663
Target:  5'- gCcCGCCCCgCgGGGCGGCCCGcCGc- -3'
miRNA:   3'- aGcGCGGGG-GgCCCGCCGGGCuGCuc -5'
23650 5' -68.2 NC_005261.1 + 125532 0.71 0.179663
Target:  5'- cUCGCGCCgCCCgcaGGGCGGCgCCa--GAGg -3'
miRNA:   3'- -AGCGCGG-GGGg--CCCGCCG-GGcugCUC- -5'
23650 5' -68.2 NC_005261.1 + 70813 0.71 0.183866
Target:  5'- cCGCGCCggcggCCCCGGGCG-CgCCGGCGc- -3'
miRNA:   3'- aGCGCGG-----GGGGCCCGCcG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 4548 0.71 0.185571
Target:  5'- cCGgGCCCuggccuuggcuggauCCgCGGGCgGGUCCGGCGGGg -3'
miRNA:   3'- aGCgCGGG---------------GG-GCCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 38296 0.71 0.188155
Target:  5'- gUGCugGCCCgCCUgagcgcgcaGGGCGGCCCGAUGGu -3'
miRNA:   3'- aGCG--CGGG-GGG---------CCCGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 131454 0.71 0.188155
Target:  5'- cCGCGCCUCgCGGGCGccuCCCGccuccGCGAGc -3'
miRNA:   3'- aGCGCGGGGgGCCCGCc--GGGC-----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 93947 0.71 0.188155
Target:  5'- -gGCGCCgCCuCCGGGCGGUcggCCGuCGAc -3'
miRNA:   3'- agCGCGG-GG-GGCCCGCCG---GGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 59991 0.71 0.188155
Target:  5'- gUC-CGCaCCCUCGGGCaGCgCGACGGGc -3'
miRNA:   3'- -AGcGCG-GGGGGCCCGcCGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12503 0.71 0.192532
Target:  5'- aUG-GCCCCCCGGGCGaCCgCG-CGGGg -3'
miRNA:   3'- aGCgCGGGGGGCCCGCcGG-GCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 63450 0.71 0.192532
Target:  5'- cCGCGCCCgCCGaGC-GCCCG-CGAGg -3'
miRNA:   3'- aGCGCGGGgGGCcCGcCGGGCuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.