miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 63450 0.71 0.192532
Target:  5'- cCGCGCCCgCCGaGC-GCCCG-CGAGg -3'
miRNA:   3'- aGCGCGGGgGGCcCGcCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 110945 0.7 0.196998
Target:  5'- -aGCGCCgCCC-GGCGGCCCaccCGGGa -3'
miRNA:   3'- agCGCGGgGGGcCCGCCGGGcu-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 53420 0.7 0.196998
Target:  5'- gCGCGCCCCCCGccguccGCcaGCCCGuCGGGc -3'
miRNA:   3'- aGCGCGGGGGGCc-----CGc-CGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 47609 0.7 0.196998
Target:  5'- -aGcCGCCCCCUgcggGGGCGGCCgCGGCc-- -3'
miRNA:   3'- agC-GCGGGGGG----CCCGCCGG-GCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 135001 0.7 0.19881
Target:  5'- -gGCGCCCCUggCGcGGCgGGCCCGcacgcggccgcggcgGCGAGg -3'
miRNA:   3'- agCGCGGGGG--GC-CCG-CCGGGC---------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5130 0.7 0.201554
Target:  5'- -gGCGgCCCgCCGGcGCucgcgcgccucGGCCCGGCGGGc -3'
miRNA:   3'- agCGCgGGG-GGCC-CG-----------CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 35040 0.7 0.201554
Target:  5'- gCGCGCCgCCCuaacGGCGGCCgcgCGGCGGc -3'
miRNA:   3'- aGCGCGGgGGGc---CCGCCGG---GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 38928 0.7 0.201554
Target:  5'- gCGCGCCaagCC-GGCGGCCgGGCGGGc -3'
miRNA:   3'- aGCGCGGgg-GGcCCGCCGGgCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 74440 0.7 0.205733
Target:  5'- -aGCGCCCCCCcggcgggGGGUGGgggcgccgccCCCGGCGcGg -3'
miRNA:   3'- agCGCGGGGGG-------CCCGCC----------GGGCUGCuC- -5'
23650 5' -68.2 NC_005261.1 + 133794 0.7 0.206202
Target:  5'- gCGCauCCCgCCCGGGCuGCUCGACGGc -3'
miRNA:   3'- aGCGc-GGG-GGGCCCGcCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 93655 0.7 0.206202
Target:  5'- cCGCGUacgcccaccggUCCgCGGGCGGCggcgCCGGCGGGg -3'
miRNA:   3'- aGCGCG-----------GGGgGCCCGCCG----GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 63555 0.7 0.206202
Target:  5'- cCGUGCCCgCUGGcGCGGCCggcaUGAUGGGc -3'
miRNA:   3'- aGCGCGGGgGGCC-CGCCGG----GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 32526 0.7 0.206202
Target:  5'- cCGCGCCCggcCCCGGcccCGGCCgCGGCGcGGg -3'
miRNA:   3'- aGCGCGGG---GGGCCc--GCCGG-GCUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 83027 0.7 0.206202
Target:  5'- -gGCGCCCCCgggaGGGCcGCUCGccGCGGGa -3'
miRNA:   3'- agCGCGGGGGg---CCCGcCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 56337 0.7 0.206202
Target:  5'- gCGCGCgCCgaggCCGGGUuaaauaccGGCaCCGGCGAGg -3'
miRNA:   3'- aGCGCGgGG----GGCCCG--------CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 28563 0.7 0.210942
Target:  5'- aCGCGgCCCgCCGGGCcgaGGCgcgcgagcgCCGGCGGGc -3'
miRNA:   3'- aGCGCgGGG-GGCCCG---CCG---------GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 49806 0.7 0.210942
Target:  5'- aCGuCGCCCUCCGcGG-GGCgCGugGAGu -3'
miRNA:   3'- aGC-GCGGGGGGC-CCgCCGgGCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 72435 0.7 0.210942
Target:  5'- gCGCuuGCCCCCggCGGGgGcGCCCGcgGCGAGc -3'
miRNA:   3'- aGCG--CGGGGG--GCCCgC-CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 75147 0.7 0.215775
Target:  5'- -aGCGCCCCCUGGcgacgcGCGGCauggacuaccgCGACGGGc -3'
miRNA:   3'- agCGCGGGGGGCC------CGCCGg----------GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 135069 0.7 0.220703
Target:  5'- cCGcCGCUUUCCGGcggcgggcucGCGGCCCGGCGGc -3'
miRNA:   3'- aGC-GCGGGGGGCC----------CGCCGGGCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.