Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23650 | 5' | -68.2 | NC_005261.1 | + | 101920 | 0.66 | 0.382154 |
Target: 5'- cCGCGUgCCCCcGGCGGUagaacgccacguacUUGGCGAGc -3' miRNA: 3'- aGCGCGgGGGGcCCGCCG--------------GGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 31444 | 0.66 | 0.379873 |
Target: 5'- -gGCGCCgCCCGgcgaggacgagcgccGGCGGCCUGAgUGGc -3' miRNA: 3'- agCGCGGgGGGC---------------CCGCCGGGCU-GCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 135436 | 0.66 | 0.376846 |
Target: 5'- cUCGCacGCCgCCCaGGCGGCgCGggcgcuGCGGGa -3' miRNA: 3'- -AGCG--CGGgGGGcCCGCCGgGC------UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 117264 | 0.66 | 0.376846 |
Target: 5'- cCGCGCgCCUCGaggacGGCGaGCCUGGCGc- -3' miRNA: 3'- aGCGCGgGGGGC-----CCGC-CGGGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 90220 | 0.66 | 0.376846 |
Target: 5'- -aGCGCCCUCgCGcGGCGGgCgGGCGc- -3' miRNA: 3'- agCGCGGGGG-GC-CCGCCgGgCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 66016 | 0.66 | 0.376092 |
Target: 5'- gCGCGCCaCCgCCGgcgcgucguagucGGCGGCCaCGGCcAGc -3' miRNA: 3'- aGCGCGG-GG-GGC-------------CCGCCGG-GCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 107883 | 0.66 | 0.376092 |
Target: 5'- cUCGCGCCCgcggcccgcuuguCCgCGGccGCGGCCuCGgccACGAGu -3' miRNA: 3'- -AGCGCGGG-------------GG-GCC--CGCCGG-GC---UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 58542 | 0.66 | 0.374587 |
Target: 5'- -aGcCGCCgCCCGGGCuccugcgccgucguGGCCgcgagCGGCGAGc -3' miRNA: 3'- agC-GCGGgGGGCCCG--------------CCGG-----GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 132472 | 0.66 | 0.372337 |
Target: 5'- cCGCGCCggcagcgccucgccgUCCUGGGaCGcGCCCGACc-- -3' miRNA: 3'- aGCGCGG---------------GGGGCCC-GC-CGGGCUGcuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 112056 | 0.66 | 0.369351 |
Target: 5'- -aGcCGgCCUUCGGGCGuGCCCucgucGGCGAGg -3' miRNA: 3'- agC-GCgGGGGGCCCGC-CGGG-----CUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 39173 | 0.66 | 0.369351 |
Target: 5'- aCGCGCUCgggCCCGacucGCGcCCCGGCGAGc -3' miRNA: 3'- aGCGCGGG---GGGCc---CGCcGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 71778 | 0.66 | 0.369351 |
Target: 5'- cCGCgGCCCgCUCGcagcugagcgcGGCccGGCCCGugGGGa -3' miRNA: 3'- aGCG-CGGG-GGGC-----------CCG--CCGGGCugCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 17554 | 0.66 | 0.369351 |
Target: 5'- gCGgGCCCgCCGuucggcGGUGGCCUugcgGGCGAGc -3' miRNA: 3'- aGCgCGGGgGGC------CCGCCGGG----CUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 100827 | 0.66 | 0.369351 |
Target: 5'- cUGCGCCgCCCaGGCcgggaGCUCGGCGAc -3' miRNA: 3'- aGCGCGGgGGGcCCGc----CGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 111776 | 0.66 | 0.369351 |
Target: 5'- cUGCGCgCCCgGGGUGuGCCCcugGACGc- -3' miRNA: 3'- aGCGCGgGGGgCCCGC-CGGG---CUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 8825 | 0.66 | 0.369351 |
Target: 5'- -gGCGCCCgCCGGGCaagggGGCggggacaggCCGugGGa -3' miRNA: 3'- agCGCGGGgGGCCCG-----CCG---------GGCugCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 12345 | 0.66 | 0.369351 |
Target: 5'- gCGCgGCCgCCgCCGcGGCGGCaaCCGGCGc- -3' miRNA: 3'- aGCG-CGG-GG-GGC-CCGCCG--GGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 49144 | 0.66 | 0.369351 |
Target: 5'- cCGCGCgCagguauuugUCCGcaaaGGCGGCCaCGGCGGGg -3' miRNA: 3'- aGCGCGgG---------GGGC----CCGCCGG-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 53542 | 0.66 | 0.368607 |
Target: 5'- gUUGCGCUCUUCGGccgcgccGCGGCCCaGGCGc- -3' miRNA: 3'- -AGCGCGGGGGGCC-------CGCCGGG-CUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 4960 | 0.66 | 0.368607 |
Target: 5'- -gGCGCCCCcggCCGcGGCguccucuggGGCCCGGagggcgcCGAGg -3' miRNA: 3'- agCGCGGGG---GGC-CCG---------CCGGGCU-------GCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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