miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 134871 0.66 0.364903
Target:  5'- cCGCGCCCCCgCGGGCcccugcugugcguucGG-UgGugGAGc -3'
miRNA:   3'- aGCGCGGGGG-GCCCG---------------CCgGgCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 32327 0.66 0.361958
Target:  5'- cCGCGgCgCCCGGcGUGGCCUggGACGcGGa -3'
miRNA:   3'- aGCGCgGgGGGCC-CGCCGGG--CUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 75828 0.66 0.361958
Target:  5'- gCGCgGCCgCgCCCGGggaggggcgcGCGGCgCCGACGGc -3'
miRNA:   3'- aGCG-CGG-G-GGGCC----------CGCCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 92565 0.66 0.361958
Target:  5'- gCGCGCCCCgCGcgccGCGcGCCCacgcGCGAGc -3'
miRNA:   3'- aGCGCGGGGgGCc---CGC-CGGGc---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 29287 0.66 0.361958
Target:  5'- cUGaCGCCCUCCGgcgaGGCcuGGCCCGGCa-- -3'
miRNA:   3'- aGC-GCGGGGGGC----CCG--CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 102545 0.66 0.361958
Target:  5'- cUGCGgCCCCa-GGC-GCCCGGCGGa -3'
miRNA:   3'- aGCGCgGGGGgcCCGcCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 135641 0.66 0.361225
Target:  5'- aUGCGCUgCUaccugcgcgggcgCGGGCGGCCCucgcuCGAGg -3'
miRNA:   3'- aGCGCGGgGG-------------GCCCGCCGGGcu---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 23490 0.66 0.361225
Target:  5'- gCGgGCCCgCCUGGGCaggcgcgGGCCCuGgGAGc -3'
miRNA:   3'- aGCgCGGG-GGGCCCG-------CCGGGcUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 32003 0.66 0.359761
Target:  5'- cCGUGCCgCCgcgcgaguaCCGGcagcgcgugcugccGCGGCUCGACGGGc -3'
miRNA:   3'- aGCGCGG-GG---------GGCC--------------CGCCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 232 0.67 0.35467
Target:  5'- gCGgGCCCCgCGaGCgGGCCCGGCu-- -3'
miRNA:   3'- aGCgCGGGGgGCcCG-CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 83900 0.67 0.35467
Target:  5'- gCGgGgCCgCCGGGCucgGGaCCGACGGGg -3'
miRNA:   3'- aGCgCgGGgGGCCCG---CCgGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 62919 0.67 0.35467
Target:  5'- gCGCGCCCuagCCCaccGGCaGGCagccccgcaCCGGCGAGg -3'
miRNA:   3'- aGCGCGGG---GGGc--CCG-CCG---------GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 95781 0.67 0.35467
Target:  5'- gCGCGCUgCgCCGGcGCgcugcuagccGGCgCCGGCGGGg -3'
miRNA:   3'- aGCGCGGgG-GGCC-CG----------CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 116061 0.67 0.35467
Target:  5'- -gGCGCCCCgCGuGGCGcgccggucCCCGugGAu -3'
miRNA:   3'- agCGCGGGGgGC-CCGCc-------GGGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 35305 0.67 0.35467
Target:  5'- -aGCGCCgggCCGGGCuGCUCGGgGAGg -3'
miRNA:   3'- agCGCGGgg-GGCCCGcCGGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 59395 0.67 0.35467
Target:  5'- -gGCGCCgagCCCGGGCucgccGGCgCCGGCGc- -3'
miRNA:   3'- agCGCGGg--GGGCCCG-----CCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 108599 0.67 0.35467
Target:  5'- cUCGCccacgggcaccaGCgCCUCGGGCGGCaCCGAguCGGc -3'
miRNA:   3'- -AGCG------------CGgGGGGCCCGCCG-GGCU--GCUc -5'
23650 5' -68.2 NC_005261.1 + 137915 0.67 0.35467
Target:  5'- gCGgGCCCCgCGaGCgGGCCCGGCu-- -3'
miRNA:   3'- aGCgCGGGGgGCcCG-CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 37744 0.67 0.353946
Target:  5'- gUCGC-CCCCCgCGGGCGccgcgccgcccaaGCgCCGGCGc- -3'
miRNA:   3'- -AGCGcGGGGG-GCCCGC-------------CG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 20429 0.67 0.353946
Target:  5'- -gGCGCCuUCCCGGGgGggagcgcagacguGCCCGcGCGGGu -3'
miRNA:   3'- agCGCGG-GGGGCCCgC-------------CGGGC-UGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.