miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 5484 0.67 0.350346
Target:  5'- aUCGCGCgCgCCGGgggguagcuggggccGCGGCagcggCGGCGAGg -3'
miRNA:   3'- -AGCGCGgGgGGCC---------------CGCCGg----GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 2413 0.67 0.347485
Target:  5'- gCGgGCCCCgCGcGGCGGCgggCCG-CGAu -3'
miRNA:   3'- aGCgCGGGGgGC-CCGCCG---GGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 33268 0.67 0.347485
Target:  5'- gUCGCGgCCCCCGuccccguccCGGUCCGugGGc -3'
miRNA:   3'- -AGCGCgGGGGGCcc-------GCCGGGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 60934 0.67 0.347485
Target:  5'- -gGCGaCCCgCGGGCcguGGCCCGAgCGGc -3'
miRNA:   3'- agCGCgGGGgGCCCG---CCGGGCU-GCUc -5'
23650 5' -68.2 NC_005261.1 + 57836 0.67 0.347485
Target:  5'- aCGUGCUCCgCGGGCgcgggcggcaaGGCCuCGGCGc- -3'
miRNA:   3'- aGCGCGGGGgGCCCG-----------CCGG-GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 118084 0.67 0.347485
Target:  5'- cCGCGCUCgUCUGcuGGCGGCCCGccGCGcAGa -3'
miRNA:   3'- aGCGCGGG-GGGC--CCGCCGGGC--UGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 77577 0.67 0.347485
Target:  5'- cCGCGCCCuggcacCCCGGGUacGGCuucccgCCGcCGGGg -3'
miRNA:   3'- aGCGCGGG------GGGCCCG--CCG------GGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4377 0.67 0.346772
Target:  5'- cCGCGCCgCCgaagcgcacgcggCCGGGCGGCggCGGCGc- -3'
miRNA:   3'- aGCGCGG-GG-------------GGCCCGCCGg-GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 134715 0.67 0.340404
Target:  5'- gCGCGCCCagacccggCCGGGaccCGGaCUCGGCGAc -3'
miRNA:   3'- aGCGCGGGg-------GGCCC---GCC-GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 39231 0.67 0.340404
Target:  5'- cUCGCGCgCgCCGGcGaGGUcuCCGGCGAGg -3'
miRNA:   3'- -AGCGCGgGgGGCC-CgCCG--GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 75394 0.67 0.340404
Target:  5'- gCGCGCCaucgaCgaGGGCgcGGCCCGGCGc- -3'
miRNA:   3'- aGCGCGGg----GggCCCG--CCGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 90537 0.67 0.340404
Target:  5'- gCGCGCaUCCCCGccgcCGcGCCCGAgGAGg -3'
miRNA:   3'- aGCGCG-GGGGGCcc--GC-CGGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 94997 0.67 0.339702
Target:  5'- gCGCGCCCCgCCcugcgGGGCGGgCuauaaagccgccgCCGGCGGc -3'
miRNA:   3'- aGCGCGGGG-GG-----CCCGCC-G-------------GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 129768 0.67 0.333429
Target:  5'- -gGCGaCCgCCGGGCucGGCCCGGCc-- -3'
miRNA:   3'- agCGCgGGgGGCCCG--CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 41104 0.67 0.333429
Target:  5'- cCGCGUCgUCCGcGGCgGGCCCGAgCGc- -3'
miRNA:   3'- aGCGCGGgGGGC-CCG-CCGGGCU-GCuc -5'
23650 5' -68.2 NC_005261.1 + 87581 0.67 0.333429
Target:  5'- cCGCGCCgCCCaGGcCGGUggucuuggugCCGGCGAc -3'
miRNA:   3'- aGCGCGGgGGGcCC-GCCG----------GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 17345 0.67 0.333429
Target:  5'- cCGC-CCCgCCCGGGCaccccgcccaGGUCCGACu-- -3'
miRNA:   3'- aGCGcGGG-GGGCCCG----------CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 48321 0.67 0.333429
Target:  5'- gUCGgGCCCgggCUCggGGGCGcGCgCGGCGAGg -3'
miRNA:   3'- -AGCgCGGG---GGG--CCCGC-CGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 23689 0.67 0.333429
Target:  5'- -aGCGCCCCCgacgCGaGGCccGCCCGGuCGGGu -3'
miRNA:   3'- agCGCGGGGG----GC-CCGc-CGGGCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 40256 0.67 0.333429
Target:  5'- -aGCGCCa-UgGcGGCGGCCgCGGCGGGg -3'
miRNA:   3'- agCGCGGggGgC-CCGCCGG-GCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.