miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 23689 0.67 0.333429
Target:  5'- -aGCGCCCCCgacgCGaGGCccGCCCGGuCGGGu -3'
miRNA:   3'- agCGCGGGGG----GC-CCGc-CGGGCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 35077 0.67 0.332738
Target:  5'- cCGCGCCCCCucgcccuCGGagccGCGGUgagCGGCGAGc -3'
miRNA:   3'- aGCGCGGGGG-------GCC----CGCCGg--GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 29852 0.67 0.326559
Target:  5'- cCGUGCUCgCCGGccgcGCGGCgCCGGCGc- -3'
miRNA:   3'- aGCGCGGGgGGCC----CGCCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 15262 0.67 0.326559
Target:  5'- cCGCGaUCgCCCC-GGCGGCgCCGcCGGGg -3'
miRNA:   3'- aGCGC-GG-GGGGcCCGCCG-GGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 76450 0.67 0.326559
Target:  5'- aCGCGCCCgaCGgcgacGGCGGCgCCGGCGc- -3'
miRNA:   3'- aGCGCGGGggGC-----CCGCCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 92760 0.67 0.326559
Target:  5'- cCGCGCCgCUcggaCCGGGcCGaGCCCGGgcuCGGGg -3'
miRNA:   3'- aGCGCGG-GG----GGCCC-GC-CGGGCU---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 77736 0.67 0.324519
Target:  5'- -gGCGCCgguacaacugggagCCCCuacgcagccgGGGCGGCggggaCGACGAGg -3'
miRNA:   3'- agCGCGG--------------GGGG----------CCCGCCGg----GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 106654 0.67 0.324519
Target:  5'- gUCGCGCUCgCCGGcGCGgucguccagcgcgcGCCCGAgGGc -3'
miRNA:   3'- -AGCGCGGGgGGCC-CGC--------------CGGGCUgCUc -5'
23650 5' -68.2 NC_005261.1 + 77523 0.67 0.319795
Target:  5'- cCGCGCCCCcgcccccgaugCCGGGCuGGUaCGGCGc- -3'
miRNA:   3'- aGCGCGGGG-----------GGCCCG-CCGgGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 134134 0.67 0.319795
Target:  5'- cUCGa-CCCCCUGGGCuGcGCCUGGCGc- -3'
miRNA:   3'- -AGCgcGGGGGGCCCG-C-CGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 135312 0.67 0.319795
Target:  5'- gCGUGUCgCCCUGGGCGGCCguGCuGGa -3'
miRNA:   3'- aGCGCGG-GGGGCCCGCCGGgcUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 3821 0.67 0.319795
Target:  5'- gCGCGCUgCCgCGGGCccgGGCgCUGGCGGc -3'
miRNA:   3'- aGCGCGGgGG-GCCCG---CCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 4854 0.67 0.319795
Target:  5'- cCGCaGCCUCaaGGGCGGCggccaCGACGGc -3'
miRNA:   3'- aGCG-CGGGGggCCCGCCGg----GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 117214 0.67 0.319795
Target:  5'- gCGCGCCCgcugCCUGGGCGccgaGUCCGccuCGGGu -3'
miRNA:   3'- aGCGCGGG----GGGCCCGC----CGGGCu--GCUC- -5'
23650 5' -68.2 NC_005261.1 + 68199 0.67 0.319795
Target:  5'- cUCGC-CCCCgccgCCGGcGCGGCCgacaaCGGCGAc -3'
miRNA:   3'- -AGCGcGGGG----GGCC-CGCCGG-----GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 87991 0.67 0.319124
Target:  5'- cUCGCGCCggcuccuCCCCcGGCGGgCCCGuuaaaGCGGc -3'
miRNA:   3'- -AGCGCGG-------GGGGcCCGCC-GGGC-----UGCUc -5'
23650 5' -68.2 NC_005261.1 + 113128 0.67 0.313136
Target:  5'- cUCuCGCCCgCCgCGcGGCGGCUgaaCGugGAGa -3'
miRNA:   3'- -AGcGCGGG-GG-GC-CCGCCGG---GCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 30759 0.67 0.313136
Target:  5'- cCGgGCCCUaguCCGGGCcggagcccGGCCgCGGCGGu -3'
miRNA:   3'- aGCgCGGGG---GGCCCG--------CCGG-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 24170 0.67 0.313136
Target:  5'- gUCGCaGgCUUCCGGGgGGUcgUCGGCGAGg -3'
miRNA:   3'- -AGCG-CgGGGGGCCCgCCG--GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 2820 0.67 0.313136
Target:  5'- -gGCGgCCCCagcccgagcuCGGGCGGCagggCCGGCGGc -3'
miRNA:   3'- agCGCgGGGG----------GCCCGCCG----GGCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.