miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 96 0.69 0.254548
Target:  5'- -gGCGCgCCCCCGGGCcccgccgcccgcgccGGCgCCGccccuggugcucGCGGGg -3'
miRNA:   3'- agCGCG-GGGGGCCCG---------------CCG-GGC------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 232 0.67 0.35467
Target:  5'- gCGgGCCCCgCGaGCgGGCCCGGCu-- -3'
miRNA:   3'- aGCgCGGGGgGCcCG-CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 343 0.76 0.085653
Target:  5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3'
miRNA:   3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 1233 0.68 0.287556
Target:  5'- cCGuCGCCggCCCCGGGaaGCCCGAguccgugccCGGGg -3'
miRNA:   3'- aGC-GCGG--GGGGCCCgcCGGGCU---------GCUC- -5'
23650 5' -68.2 NC_005261.1 + 1380 0.69 0.236065
Target:  5'- cCGCGUCCCaggccacgCCGGGCgccgcGGCCgCGGCGGc -3'
miRNA:   3'- aGCGCGGGG--------GGCCCG-----CCGG-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 2413 0.67 0.347485
Target:  5'- gCGgGCCCCgCGcGGCGGCgggCCG-CGAu -3'
miRNA:   3'- aGCgCGGGGgGC-CCGCCG---GGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 2564 0.72 0.145536
Target:  5'- gCGCGggcgugugguaCUCCCCGGGCGGCaCgCGGCGGa -3'
miRNA:   3'- aGCGC-----------GGGGGGCCCGCCG-G-GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 2820 0.67 0.313136
Target:  5'- -gGCGgCCCCagcccgagcuCGGGCGGCagggCCGGCGGc -3'
miRNA:   3'- agCGCgGGGG----------GCCCGCCG----GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 3821 0.67 0.319795
Target:  5'- gCGCGCUgCCgCGGGCccgGGCgCUGGCGGc -3'
miRNA:   3'- aGCGCGGgGG-GCCCG---CCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 4377 0.67 0.346772
Target:  5'- cCGCGCCgCCgaagcgcacgcggCCGGGCGGCggCGGCGc- -3'
miRNA:   3'- aGCGCGG-GG-------------GGCCCGCCGg-GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 4452 0.69 0.25793
Target:  5'- gCGgGCCCUCCagcggcGGCGGCCCGucgcGCGGc -3'
miRNA:   3'- aGCgCGGGGGGc-----CCGCCGGGC----UGCUc -5'
23650 5' -68.2 NC_005261.1 + 4517 0.76 0.079579
Target:  5'- gCGCGCCCgCgCGGGC-GCCgCGGCGAGg -3'
miRNA:   3'- aGCGCGGGgG-GCCCGcCGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4548 0.71 0.185571
Target:  5'- cCGgGCCCuggccuuggcuggauCCgCGGGCgGGUCCGGCGGGg -3'
miRNA:   3'- aGCgCGGG---------------GG-GCCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4590 0.69 0.263649
Target:  5'- -gGCGCCCCCCGGcGCcagGGCUccccuCGGCGu- -3'
miRNA:   3'- agCGCGGGGGGCC-CG---CCGG-----GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 4854 0.67 0.319795
Target:  5'- cCGCaGCCUCaaGGGCGGCggccaCGACGGc -3'
miRNA:   3'- aGCG-CGGGGggCCCGCCGg----GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 4960 0.66 0.368607
Target:  5'- -gGCGCCCCcggCCGcGGCguccucuggGGCCCGGagggcgcCGAGg -3'
miRNA:   3'- agCGCGGGG---GGC-CCG---------CCGGGCU-------GCUC- -5'
23650 5' -68.2 NC_005261.1 + 5130 0.7 0.201554
Target:  5'- -gGCGgCCCgCCGGcGCucgcgcgccucGGCCCGGCGGGc -3'
miRNA:   3'- agCGCgGGG-GGCC-CG-----------CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5195 0.69 0.236065
Target:  5'- cCGgGCCCCCCuccGGGCcgagguccgcGGaCUCGAUGAGg -3'
miRNA:   3'- aGCgCGGGGGG---CCCG----------CC-GGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5259 0.68 0.306583
Target:  5'- cUCGUGCCCgCCGGGagacgccauggcCGGCCgCGgugcgcGCGGGu -3'
miRNA:   3'- -AGCGCGGGgGGCCC------------GCCGG-GC------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5484 0.67 0.350346
Target:  5'- aUCGCGCgCgCCGGgggguagcuggggccGCGGCagcggCGGCGAGg -3'
miRNA:   3'- -AGCGCGgGgGGCC---------------CGCCGg----GCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.